Rice gene details
Searching for LOC_Os05g05180 [OsGH3.6 - Probable indole-3-acetic acid-amido synthetase, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g05180.1 430 4 411 PF03321.5 GH3
2 LOC_Os05g05180.2 603 9 584 PF03321.5 GH3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -3
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -6
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009719 response to endogenous stimulus (RGAP)
3 GO:0008152 metabolic process (RGAP)
4 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 MCE:1000103 fluridone (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK002 seed dormancy
2 CQE37 seed dormancy
3 CQE38 chlorophyll ratio
4 CQF7 rubisco to nitrogen content ratio
5 AQEB002 1000-seed weight
6 AQEB006 1000-seed weight
7 AQEB011 1000-seed weight
8 CQE39 rubisco to chlorophyll ratio
9 CQAX34 plant height
10 AQBV006 tiller angle
11 AQBK013 days to heading
12 CQAS60 seed number
13 CQAS61 seed set percent
14 CQAS64 seed number
15 CQAS62 1000-seed weight
16 CQAD3 allelopathic effect
17 AQDZ012 lodging incidence
18 AQGB025 grain width
19 AQGB026 grain width
20 AQGB027 grain width
21 AQGB028 grain width
22 AQGB029 grain width
23 AQGB030 grain width
24 AQGB031 grain width
25 AQGB032 grain width
26 AQGB043 grain length to width ratio
27 AQGB044 grain length to width ratio
28 AQGB045 grain length to width ratio
29 AQGB046 grain length to width ratio
30 AQGB047 grain length to width ratio
31 AQGB048 grain length to width ratio
32 AQGB049 grain length to width ratio
33 AQGB050 grain length to width ratio
34 DQC9 penetrated root number
35 AQBB127 plant height
36 AQBB128 plant height
37 AQBB129 plant height
38 AQBB130 plant height
39 AQCT003 blast disease resistance
40 CQAI34 root volume
41 CQAI40 root thickness
42 CQQ10 root to shoot ratio
43 CQQ21 root length
44 DQE38 relative growth rate
45 AQA037 root thickness
46 AQJ009 spikelet sterility
47 AQA031 root volume
48 AQB007 consistency viscosity
49 CQAS55 days to maturity
50 CQAS58 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000527 etiolated shoot (+)
3 PO:0000003 whole plant (+)
4 PO:0005052 plant callus (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
8 PO:0025034 leaf (+)
9 PO:0025287 seedling coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


2  Jain Mukesh; Kaur Navneet; Tyagi Akhilesh K; Khurana Jitendra P; The auxin-responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [15856348]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India