Rice gene details
Searching for LOC_Os05g05680 [1-aminocyclopropane-1-carboxylate oxidase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g05680.1 309 159 259 PF03171.12 2OG-FeII_Oxy
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  5
N22InfloresenceFC
  7
N22 Root FC
  -13
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -5

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-922 mevalonate pathway

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK002 seed dormancy
2 CQE37 seed dormancy
3 CQE38 chlorophyll ratio
4 CQF7 rubisco to nitrogen content ratio
5 AQEB002 1000-seed weight
6 AQEB006 1000-seed weight
7 AQEB011 1000-seed weight
8 CQE39 rubisco to chlorophyll ratio
9 CQAX34 plant height
10 AQBV006 tiller angle
11 AQBK013 days to heading
12 CQAS60 seed number
13 CQAS61 seed set percent
14 CQAS64 seed number
15 CQAS62 1000-seed weight
16 CQAD3 allelopathic effect
17 AQDZ012 lodging incidence
18 AQGB025 grain width
19 AQGB026 grain width
20 AQGB027 grain width
21 AQGB028 grain width
22 AQGB029 grain width
23 AQGB030 grain width
24 AQGB031 grain width
25 AQGB032 grain width
26 AQGB043 grain length to width ratio
27 AQGB044 grain length to width ratio
28 AQGB045 grain length to width ratio
29 AQGB046 grain length to width ratio
30 AQGB047 grain length to width ratio
31 AQGB048 grain length to width ratio
32 AQGB049 grain length to width ratio
33 AQGB050 grain length to width ratio
34 DQC9 penetrated root number
35 AQA031 root volume
36 AQB007 consistency viscosity
37 CQAS55 days to maturity
38 CQAS58 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000320 upper part of first internode (-)
3 MCP:1000321 middle part of first internode (-)
4 MCP:1000322 lower part of first internode (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
8 PO:0020039 leaf lamina (+)
9 PO:0020104 leaf sheath (-)
10 PO:0020122 inflorescence axis (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


Iwamoto M; Baba-Kasai A; Kiyota S; Hara N; Takano M; ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice. Plant, Cell & Environment 2010:
PMID [20040065]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India