Rice gene details
Searching for LOC_Os05g06330 [nifU, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g06330.1 273 74 160 PF08712.3 Nfu_N
2 LOC_Os05g06330.1 273 188 258 PF01106.9 NifU
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005198 structural molecule activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0010039 response to iron ion  
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005739 mitochondrion (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK002 seed dormancy
2 CQE37 seed dormancy
3 CQE38 chlorophyll ratio
4 CQF7 rubisco to nitrogen content ratio
5 AQEB002 1000-seed weight
6 AQEB006 1000-seed weight
7 AQEB011 1000-seed weight
8 CQE39 rubisco to chlorophyll ratio
9 CQAX34 plant height
10 AQBV006 tiller angle
11 AQBK013 days to heading
12 CQAS60 seed number
13 CQAS61 seed set percent
14 CQAS64 seed number
15 CQAS62 1000-seed weight
16 CQAD3 allelopathic effect
17 AQDZ012 lodging incidence
18 AQGB025 grain width
19 AQGB026 grain width
20 AQGB027 grain width
21 AQGB028 grain width
22 AQGB029 grain width
23 AQGB030 grain width
24 AQGB031 grain width
25 AQGB032 grain width
26 AQGB043 grain length to width ratio
27 AQGB044 grain length to width ratio
28 AQGB045 grain length to width ratio
29 AQGB046 grain length to width ratio
30 AQGB047 grain length to width ratio
31 AQGB048 grain length to width ratio
32 AQGB049 grain length to width ratio
33 AQGB050 grain length to width ratio
34 DQC9 penetrated root number
35 AQA031 root volume
36 AQB007 consistency viscosity
37 CQAS55 days to maturity
38 CQAS58 spikelet number
39 CQAO20 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India