Rice gene details
Searching for LOC_Os05g06430 [OsPDIL2-1 protein disulfide isomerase PDIL2-1, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g06430.1 368 31 136 PF00085.12 Thioredoxin
2 LOC_Os05g06430.1 368 149 255 PF00085.12 Thioredoxin
3 LOC_Os05g06430.1 368 271 366 PF07749.4 ERp29
4 LOC_Os05g06430.2 367 31 136 PF00085.12 Thioredoxin
5 LOC_Os05g06430.2 367 149 255 PF00085.12 Thioredoxin
6 LOC_Os05g06430.2 367 271 365 PF07749.4 ERp29
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0006950 response to stress (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0009856 pollination (RGAP)
5 GO:0007275 multicellular organismal development (RGAP)
6 GO:0000003 reproduction (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0009791 post-embryonic development (RGAP)
9 GO:0009790 embryo development (RGAP)
Cellular component
Not found
1 GO:0005783 endoplasmic reticulum (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0005773 vacuole (RGAP)
4 GO:0005618 cell wall (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007196 light regimen (-)
2 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK002 seed dormancy
2 CQE37 seed dormancy
3 CQE38 chlorophyll ratio
4 CQF7 rubisco to nitrogen content ratio
5 AQEB002 1000-seed weight
6 AQEB006 1000-seed weight
7 AQEB011 1000-seed weight
8 CQE39 rubisco to chlorophyll ratio
9 CQAX34 plant height
10 AQBV006 tiller angle
11 AQBK013 days to heading
12 CQAS60 seed number
13 CQAS61 seed set percent
14 CQAS64 seed number
15 CQAS62 1000-seed weight
16 CQAD3 allelopathic effect
17 AQDZ012 lodging incidence
18 AQGB025 grain width
19 AQGB026 grain width
20 AQGB027 grain width
21 AQGB028 grain width
22 AQGB029 grain width
23 AQGB030 grain width
24 AQGB031 grain width
25 AQGB032 grain width
26 AQGB043 grain length to width ratio
27 AQGB044 grain length to width ratio
28 AQGB045 grain length to width ratio
29 AQGB046 grain length to width ratio
30 AQGB047 grain length to width ratio
31 AQGB048 grain length to width ratio
32 AQGB049 grain length to width ratio
33 AQGB050 grain length to width ratio
34 DQC9 penetrated root number
35 AQA031 root volume
36 AQB007 consistency viscosity
37 CQAS55 days to maturity
38 CQAS58 spikelet number
39 CQAO20 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (-)
2 MCP:1000110 1 day pre-heading stage (-)
3 MCP:1000136 5 days pre-heading stage (-)
4 MCP:1000194 inflorescence 4-5cm stage (-)
5 MCP:1000201 14 days post-heading stage (-)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (-)
7 MCP:1000489 3 days post-anthesis stage (-)
8 PO:0007015 radicle emergence (-)
9 PO:0007022 imbibition (-)
10 PO:0007041 inflorescence emergence from flag leaf sheath (-)
11 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (-)
12 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (-)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (-)
4 PO:0009005 root (-)
5 PO:0009006 shoot system (-)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (-)
8 PO:0009029 stamen (-)
9 PO:0009047 stem (-)
10 PO:0009049 inflorescence (-)
11 PO:0009051 spikelet (-)
12 PO:0020031 radicle (-)
13 PO:0020032 plumule (-)
14 PO:0020103 flag leaf (-)
15 PO:0020104 leaf sheath (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India