Rice gene details
Searching for LOC_Os05g06670 [gibberellin 2-oxidase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g06670.1 383 190 321 PF03171.12 2OG-FeII_Oxy
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -9
N22 Root FC
  -7
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009056 catabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0006629 lipid metabolic process (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
Not found

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEB002 1000-seed weight
2 AQEB006 1000-seed weight
3 AQEB011 1000-seed weight
4 CQE39 rubisco to chlorophyll ratio
5 CQAX34 plant height
6 AQBV006 tiller angle
7 AQBK013 days to heading
8 CQAS60 seed number
9 CQAS61 seed set percent
10 CQAS64 seed number
11 CQAS62 1000-seed weight
12 CQAD3 allelopathic effect
13 AQGB025 grain width
14 AQGB026 grain width
15 AQGB027 grain width
16 AQGB028 grain width
17 AQGB029 grain width
18 AQGB030 grain width
19 AQGB031 grain width
20 AQGB032 grain width
21 AQGB043 grain length to width ratio
22 AQGB044 grain length to width ratio
23 AQGB045 grain length to width ratio
24 AQGB046 grain length to width ratio
25 AQGB047 grain length to width ratio
26 AQGB048 grain length to width ratio
27 AQGB049 grain length to width ratio
28 AQGB050 grain length to width ratio
29 DQC9 penetrated root number
30 AQA031 root volume
31 AQB007 consistency viscosity
32 CQAS55 days to maturity
33 CQAS58 spikelet number
34 CQAO20 panicle number
35 AQFP011 culm length
36 AQFP033 culm length
37 AQR036 rooting depth
38 AQR037 rooting depth

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
3 PO:0007089 stem elongation (+)
4 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0020142 stem internode (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shan Chi; Mei Zhiling; Duan Jianli; Chen Haiying; Feng Huafeng; Cai Weiming; OsGA2ox5, a Gibberellin Metabolism Enzyme, Is Involved in Plant Growth, the Root Gravity Response and Salt Stress. PloS one 2014:9
PMID [24475234]


Li Juan; Jiang Jiafu; Qian Qian; Xu Yunyuan; Zhang Cui; Xiao Jun; Du Cheng; Luo Wei; Zou Guoxing; Chen Mingluan; Huang Yunqing; Feng Yuqi; Cheng Zhukuan; Yuan Ming; Chong Kang; Mutation of Rice BC12/GDD1, Which Encodes a Kinesin-Like Protein That Binds to a GA Biosynthesis Gene Promoter, Leads to Dwarfism with Impaired Cell Elongation. The Plant Cell 2011:23
PMID [21325138]


Liu Yaju; Xu Yunyuan; Xiao Jun; Ma Qibin; Li Dan; Xue Zhen; Chong Kang; OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice. Journal of Plant Physiology 2011:168
PMID [21316795]


Wan Liyun; Zhang Jianfei; Zhang Haiwen; Zhang Zhijin; Quan Ruidang; Zhou Shirong; Huang Rongfeng; Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice. Plos One 2011:6
PMID [21966459]


Huang Jian; Tang Ding; Shen Yi; Qin Baoxiang; Hong Lilan; You Aiqing; Li Ming; Wang Xin; Yu Hengxiu; Gu Minghong; Cheng Zhukuan; Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.). Journal of Genetics and Genomics 2010:37
PMID [20171575]


Iwamoto M; Baba-Kasai A; Kiyota S; Hara N; Takano M; ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice. Plant, Cell & Environment 2010:
PMID [20040065]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India