Rice gene details
Searching for LOC_Os05g07210 [metal cation transporter, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g07210.1 396 26 392 PF02535.14 Zip
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000173 cadmium nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEB002 1000-seed weight
2 AQEB006 1000-seed weight
3 AQEB011 1000-seed weight
4 CQE39 rubisco to chlorophyll ratio
5 CQAX34 plant height
6 AQBV006 tiller angle
7 AQBK013 days to heading
8 CQAS60 seed number
9 CQAS61 seed set percent
10 CQAS64 seed number
11 CQAS62 1000-seed weight
12 CQAD3 allelopathic effect
13 AQGB025 grain width
14 AQGB026 grain width
15 AQGB027 grain width
16 AQGB028 grain width
17 AQGB029 grain width
18 AQGB030 grain width
19 AQGB031 grain width
20 AQGB032 grain width
21 AQGB043 grain length to width ratio
22 AQGB044 grain length to width ratio
23 AQGB045 grain length to width ratio
24 AQGB046 grain length to width ratio
25 AQGB047 grain length to width ratio
26 AQGB048 grain length to width ratio
27 AQGB049 grain length to width ratio
28 AQGB050 grain length to width ratio
29 DQC9 penetrated root number
30 AQA031 root volume
31 AQB007 consistency viscosity
32 CQAS55 days to maturity
33 CQAS58 spikelet number
34 CQAO20 panicle number
35 AQFP011 culm length
36 AQFP033 culm length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sasaki Akimasa; Yamaji Naoki; Ma Jian Feng; Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice. Journal of experimental botany 2014:65
PMID [25151617]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India