Rice gene details
Searching for LOC_Os05g07690 [thioredoxin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g07690.1 133 24 128 PF00085.12 Thioredoxin
2 LOC_Os05g07690.2 133 24 128 PF00085.12 Thioredoxin
3 LOC_Os05g07690.3 102 24 86 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  6
N22 Root FC
  -12
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  -2
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006464 protein modification process (RGAP)
3 GO:0007154 cell communication (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0009536 plastid (RGAP)
4 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007204 1-naphthaleneacetic acid (-)
3 EO:0007290 kinetin regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEB002 1000-seed weight
2 AQEB006 1000-seed weight
3 AQEB011 1000-seed weight
4 CQE39 rubisco to chlorophyll ratio
5 CQAX34 plant height
6 AQBV006 tiller angle
7 AQBK013 days to heading
8 CQAS60 seed number
9 CQAS61 seed set percent
10 CQAS64 seed number
11 CQAS62 1000-seed weight
12 AQGB025 grain width
13 AQGB026 grain width
14 AQGB027 grain width
15 AQGB028 grain width
16 AQGB029 grain width
17 AQGB030 grain width
18 AQGB031 grain width
19 AQGB032 grain width
20 AQGB043 grain length to width ratio
21 AQGB044 grain length to width ratio
22 AQGB045 grain length to width ratio
23 AQGB046 grain length to width ratio
24 AQGB047 grain length to width ratio
25 AQGB048 grain length to width ratio
26 AQGB049 grain length to width ratio
27 AQGB050 grain length to width ratio
28 DQC9 penetrated root number
29 CQAS55 days to maturity
30 CQAS58 spikelet number
31 CQAO20 panicle number
32 AQFP011 culm length
33 AQFP033 culm length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (-)
2 MCP:1000110 1 day pre-heading stage (-)
3 MCP:1000136 5 days pre-heading stage (-)
4 MCP:1000194 inflorescence 4-5cm stage (-)
5 MCP:1000201 14 days post-heading stage (-)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (-)
7 MCP:1000489 3 days post-anthesis stage (-)
8 MCP:1000518 seedling development stage (-)
9 PO:0007022 imbibition (-)
10 PO:0007041 inflorescence emergence from flag leaf sheath (-)
11 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (-)
12 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (-)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (-)
4 PO:0009005 root (-)
5 PO:0009006 shoot system (-)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (-)
8 PO:0009029 stamen (-)
9 PO:0009047 stem (-)
10 PO:0009049 inflorescence (-)
11 PO:0009051 spikelet (-)
12 PO:0020031 radicle (-)
13 PO:0020103 flag leaf (-)
14 PO:0020104 leaf sheath (-)
15 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India