Rice gene details
Searching for LOC_Os05g08540 [gibberellin 3-beta-dioxygenase 2-2, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g08540.1 385 226 327 PF03171.12 2OG-FeII_Oxy
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -5
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0008152 metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0006629 lipid metabolic process (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0007165 signal transduction (RGAP)
Cellular component
Not found
1 GO:0005737 cytoplasm (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5035 gibberellin biosynthesis III (early C-13 hydroxylation)

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEB002 1000-seed weight
2 AQEB006 1000-seed weight
3 AQEB011 1000-seed weight
4 CQE39 rubisco to chlorophyll ratio
5 CQAX34 plant height
6 AQBV006 tiller angle
7 AQBK013 days to heading
8 CQAS60 seed number
9 CQAS61 seed set percent
10 CQAS64 seed number
11 CQAS62 1000-seed weight
12 AQGB025 grain width
13 AQGB026 grain width
14 AQGB027 grain width
15 AQGB028 grain width
16 AQGB029 grain width
17 AQGB030 grain width
18 AQGB031 grain width
19 AQGB032 grain width
20 AQGB043 grain length to width ratio
21 AQGB044 grain length to width ratio
22 AQGB045 grain length to width ratio
23 AQGB046 grain length to width ratio
24 AQGB047 grain length to width ratio
25 AQGB048 grain length to width ratio
26 AQGB049 grain length to width ratio
27 AQGB050 grain length to width ratio
28 DQC9 penetrated root number
29 CQAS55 days to maturity
30 CQAS58 spikelet number
31 CQAO20 panicle number
32 AQFP011 culm length
33 AQFP033 culm length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shan Chi; Mei Zhiling; Duan Jianli; Chen Haiying; Feng Huafeng; Cai Weiming; OsGA2ox5, a Gibberellin Metabolism Enzyme, Is Involved in Plant Growth, the Root Gravity Response and Salt Stress. PloS one 2014:9
PMID [24475234]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India