Rice gene details
Searching for LOC_Os05g09500 [hexokinase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g09500.1 464 3 213 PF00349.13 Hexokinase_1
2 LOC_Os05g09500.1 464 215 460 PF03727.8 Hexokinase_2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -2
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005515 protein binding (RGAP)
3 GO:0005488 binding (RGAP)
4 GO:0016301 kinase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0051592 response to calcium ion  
2 GO:0019725 cellular homeostasis (RGAP)
3 GO:0007165 signal transduction (RGAP)
4 GO:0005975 carbohydrate metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0009056 catabolic process (RGAP)
7 GO:0008219 cell death (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005739 mitochondrion (RGAP)
3 GO:0005634 nucleus (RGAP)
4 GO:0005773 vacuole (RGAP)
5 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007025 anaerobic environment (+)
2 MCE:1000119 calcium chloride regimen (CaCl2) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CALVIN-PWY Calvin cycle
2 GLUCONEO-PWY gluconeogenesis
3 GLYCOLYSIS glycolysis I
4 PWY-1042 glycolysis IV (plant cytosol)
5 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)
6 PWY-621 sucrose degradation III
7 PWY-842 starch degradation

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEB002 1000-seed weight
2 AQEB006 1000-seed weight
3 AQEB011 1000-seed weight
4 CQE39 rubisco to chlorophyll ratio
5 CQAX34 plant height
6 AQBV006 tiller angle
7 AQBK013 days to heading
8 CQAS60 seed number
9 CQAS61 seed set percent
10 CQAS64 seed number
11 CQAS62 1000-seed weight
12 AQGB025 grain width
13 AQGB026 grain width
14 AQGB027 grain width
15 AQGB028 grain width
16 AQGB029 grain width
17 AQGB030 grain width
18 AQGB031 grain width
19 AQGB032 grain width
20 AQGB043 grain length to width ratio
21 AQGB044 grain length to width ratio
22 AQGB045 grain length to width ratio
23 AQGB046 grain length to width ratio
24 AQGB047 grain length to width ratio
25 AQGB048 grain length to width ratio
26 AQGB049 grain length to width ratio
27 AQGB050 grain length to width ratio
28 DQC9 penetrated root number
29 CQAS55 days to maturity
30 CQAS58 spikelet number
31 CQAO20 panicle number
32 AQFP011 culm length
33 AQFP033 culm length
34 AQAP007 brown planthopper resistance
35 AQCU045 spikelet fertility
36 AQCU204 plant height
37 AQFR018 seedling vigor
38 AQFR026 seedling vigor
39 AQFW190 days to heading
40 AQGS018 grain number
41 AQGS013 spikelet number
42 AQGS022 grain number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0001007 coleoptile length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kim Hyun-Bi; Cho Jung-Il; Ryoo Nayeon; Shin Dong-Ho; Park Youn-Il; Hwang Yong-Sic; Lee Sang-Kyu; An Gynheung; Jeon Jong-Seong; Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism. Journal of integrative plant biology 2015:
PMID [25951042]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India