Rice gene details
Searching for LOC_Os05g10940 [metal cation transporter, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g10940.1 385 43 381 PF02535.14 Zip
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -3
N22InfloresenceFC
  -2
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000173 cadmium nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBV006 tiller angle
3 AQBK013 days to heading
4 CQAS60 seed number
5 CQAS61 seed set percent
6 CQAS64 seed number
7 CQAS62 1000-seed weight
8 AQGB025 grain width
9 AQGB026 grain width
10 AQGB027 grain width
11 AQGB028 grain width
12 AQGB029 grain width
13 AQGB030 grain width
14 AQGB031 grain width
15 AQGB032 grain width
16 AQGB043 grain length to width ratio
17 AQGB044 grain length to width ratio
18 AQGB045 grain length to width ratio
19 AQGB046 grain length to width ratio
20 AQGB047 grain length to width ratio
21 AQGB048 grain length to width ratio
22 AQGB049 grain length to width ratio
23 AQGB050 grain length to width ratio
24 DQC9 penetrated root number
25 CQAS55 days to maturity
26 CQAS58 spikelet number
27 CQAO20 panicle number
28 AQFP011 culm length
29 AQFP033 culm length
30 AQAP007 brown planthopper resistance
31 AQCU045 spikelet fertility
32 AQCU204 plant height
33 AQFR018 seedling vigor
34 AQFR026 seedling vigor
35 AQFW190 days to heading
36 AQGS018 grain number
37 AQGS013 spikelet number
38 AQGS022 grain number
39 AQCV015 grain width

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sasaki Akimasa; Yamaji Naoki; Ma Jian Feng; Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice. Journal of experimental botany 2014:65
PMID [25151617]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India