Rice gene details
Searching for LOC_Os05g11090 [thioredoxin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g11090.1 217 83 161 PF00085.12 Thioredoxin
2 LOC_Os05g11090.2 137 3 81 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0019725 cellular homeostasis (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007196 light regimen (-)
3 EO:0007204 1-naphthaleneacetic acid (-)
4 EO:0007290 kinetin regimen (-)
5 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 AQGB025 grain width
8 AQGB026 grain width
9 AQGB027 grain width
10 AQGB028 grain width
11 AQGB029 grain width
12 AQGB030 grain width
13 AQGB031 grain width
14 AQGB032 grain width
15 AQGB043 grain length to width ratio
16 AQGB044 grain length to width ratio
17 AQGB045 grain length to width ratio
18 AQGB046 grain length to width ratio
19 AQGB047 grain length to width ratio
20 AQGB048 grain length to width ratio
21 AQGB049 grain length to width ratio
22 AQGB050 grain length to width ratio
23 DQC9 penetrated root number
24 CQAS55 days to maturity
25 CQAS58 spikelet number
26 AQFP011 culm length
27 AQFP033 culm length
28 AQAP007 brown planthopper resistance
29 AQCU045 spikelet fertility
30 AQCU204 plant height
31 AQFR018 seedling vigor
32 AQFR026 seedling vigor
33 AQFW190 days to heading
34 AQGS018 grain number
35 AQGS013 spikelet number
36 AQGS022 grain number
37 AQCV015 grain width
38 AQEO006 spikelet fertility
39 AQDQ044 seed weight
40 AQDQ045 seed weight
41 AQDQ046 plant height
42 AQDR006 1000-seed weight
43 CQAO12 1000-seed weight
44 CQAV8 osmotic adjustment capacity
45 AQEN004 blast disease resistance
46 CQAW17 root number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (-)
2 PO:0007015 radicle emergence (-)
3 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0020032 plumule (-)
2 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India