Rice gene details
Searching for LOC_Os05g12260 [CAPIP1, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g12260.1 210 50 196 PF10604.1 Polyketide_cyc2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000988 protein binding transcription factor activity  
2 GO:0004864 protein phosphatase inhibitor activity  
3 GO:0004872 receptor activity (RGAP)
4 GO:0003674 molecular_function (RGAP)
5 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009414 response to water deprivation  
3 GO:0009633 drought tolerance  
4 GO:0009651 response to salt stress  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0010555 response to mannitol stimulus  
7 GO:0042538 hyperosmotic salinity response  
8 GO:0009719 response to endogenous stimulus (RGAP)
9 GO:0007165 signal transduction (RGAP)
10 GO:0006950 response to stress (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005737 cytoplasm  
3 GO:0005634 nucleus (RGAP)
4 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007383 watering regimen (+)
4 EO:0007404 drought environment (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000044 mannitol (+)
7 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 CQAS55 days to maturity
9 CQAS58 spikelet number
10 AQFP011 culm length
11 AQFP033 culm length
12 AQGS018 grain number
13 AQGS013 spikelet number
14 AQGS022 grain number
15 AQCV015 grain width
16 AQEO006 spikelet fertility
17 AQDQ044 seed weight
18 AQDQ045 seed weight
19 AQDQ046 plant height
20 AQDR006 1000-seed weight
21 CQAO12 1000-seed weight
22 CQAV8 osmotic adjustment capacity
23 AQEN004 blast disease resistance
24 CQAW17 root number
25 AQFR023 seedling vigor
26 AQFR037 seedling vigor
27 AQFR048 seedling vigor
28 AQFP012 culm length
29 AQFP032 culm length
30 AQCU153 spikelet number
31 AQCU186 days to heading
32 AQFW122 spikelet fertility
33 AQC016 penetrated to total root ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0007057 0 germination (+)
4 PO:0007065 LP.05 five leaves visible (+)
5 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000096 first shoot internode (+)
2 MCP:1000097 third shoot internode (+)
3 MCP:1000237 second shoot internode (+)
4 MCP:1000246 fourth shoot internode (+)
5 MCP:1000351 fifth shoot internode (+)
6 PO:0000003 whole plant (+)
7 PO:0005001 basal axillary shoot (+)
8 PO:0005004 shoot node (+)
9 PO:0008037 seedling (+)
10 PO:0009005 root (+)
11 PO:0009006 shoot system (+)
12 PO:0009010 seed (+)
13 PO:0009046 flower (+)
14 PO:0009049 inflorescence (+)
15 PO:0020039 leaf lamina (+)
16 PO:0020103 flag leaf (+)
17 PO:0020104 leaf sheath (+)
18 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000093 growth rate (+)
2 MCT:1000101 seed germination (+)
3 MCT:1000535 relative root growth (+)
4 MCT:1000536 relative shoot growth (+)
5 TO:0000040 panicle length (+)
6 TO:0000136 relative water content (+)
7 TO:0000145 internode length (+)
8 TO:0000152 panicle number (+)
9 TO:0000181 seed weight (+)
10 TO:0000207 plant height (+)
11 TO:0000272 plant survivability (+)
12 TO:0000357 growth and development trait (+)
13 TO:0000430 germination rate (+)
14 TO:0000442 plant fresh weight (+)
15 TO:0001018 transpiration rate (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Amino acid involved in interaction
1 LOC_Os05g12260 - LOC_Os01g62760 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
2 LOC_Os05g12260 - LOC_Os03g16170 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
3 LOC_Os05g12260 - LOC_Os05g38290 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
4 LOC_Os05g12260 - --- LOC_Os03g16170 - --- Protein-protein interaction analysis : Bimolecular Fluorescence Complementation (BiFC) analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


2  He Yuan; Hao Qi; Li Wenqi; Yan Chuangye; Yan Nieng; Yin Ping; Identification and characterization of ABA receptors in Oryza sativa. PloS one 2014:9
PMID [24743650]


3  Kim Hyunmi; Lee Kyeyoon; Hwang Hyunsik; Bhatnagar Nikita; Kim Dool-Yi; Yoon In Sun; Byun Myung-Ok; Kim Sun Tae; Jung Ki-Hong; Kim Beom-Gi; Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression. Journal of experimental botany 2014:65
PMID [24474809]


4  Kim Hyunmi; Hwang Hyunsik; Hong Jung-Woo; Lee Young-Na; Ahn Il Pyung; Yoon In Sun; Yoo Sang-Dong; Lee Sukchan; Lee Sung Chul; Kim Beom-Gi; A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth. Journal of Experimental Botany 2011:
PMID [22071266]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India