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Searching for LOC_Os05g13790
[expressed protein ] |
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Basic information [Interpro DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Interpro ID |
Domain Name |
1 |
LOC_Os05g13790.1 |
575 |
4 |
36 |
|
seg |
2 |
LOC_Os05g13790.1 |
575 |
60 |
73 |
|
seg |
3 |
LOC_Os05g13790.1 |
575 |
100 |
121 |
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seg |
4 |
LOC_Os05g13790.1 |
575 |
144 |
164 |
|
seg |
5 |
LOC_Os05g13790.1 |
575 |
450 |
461 |
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seg |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0006970 |
response to osmotic stress |
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2 |
GO:0009651 |
response to salt stress |
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Cellular component
S. No. |
GO Id |
GO Description |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
MCE:1000016 |
polyethylene glycol (PEG) treatment |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
MCP:1000520 |
young inflorescence stage |
(+) |
3 |
PO:0007014 |
booting |
(+) |
4 |
PO:0007016 |
4 flowering |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]
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