Rice gene details
Searching for LOC_Os05g13790 [expressed protein ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os05g13790.1 575 4 36 seg
2 LOC_Os05g13790.1 575 60 73 seg
3 LOC_Os05g13790.1 575 100 121 seg
4 LOC_Os05g13790.1 575 144 164 seg
5 LOC_Os05g13790.1 575 450 461 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009651 response to salt stress  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 CQAS55 days to maturity
9 CQAS58 spikelet number
10 AQGS013 spikelet number
11 AQGS022 grain number
12 AQCV015 grain width
13 AQEO006 spikelet fertility
14 AQDQ044 seed weight
15 AQDQ045 seed weight
16 AQDQ046 plant height
17 AQDR006 1000-seed weight
18 CQAO12 1000-seed weight
19 CQAV8 osmotic adjustment capacity
20 AQEN004 blast disease resistance
21 CQAW17 root number
22 AQFR023 seedling vigor
23 AQFR037 seedling vigor
24 AQFR048 seedling vigor
25 AQFP012 culm length
26 AQFP032 culm length
27 AQCU153 spikelet number
28 AQCU186 days to heading
29 AQFW122 spikelet fertility
30 AQC016 penetrated to total root ratio
31 AQGS005 tiller number
32 AQGS014 spikelet number
33 AQEI079 leaf senescence
34 AQEI111 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
3 PO:0007014 booting (+)
4 PO:0007016 4 flowering (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0020039 leaf lamina (+)
8 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India