Rice gene details
Searching for LOC_Os05g15770 [glycosyl hydrolase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g15770.1 298 25 194 PF00704.20 Glyco_hydro_18
2 LOC_Os05g15770.1 298 266 279 PF00704.20 Glyco_hydro_18
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  4
N22 Root FC
  6
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0005488 binding (RGAP)
3 GO:0016787 hydrolase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009651 response to salt stress  
5 GO:0006950 response to stress (RGAP)
6 GO:0008152 metabolic process (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
8 GO:0009991 response to extracellular stimulus (RGAP)
9 GO:0007154 cell communication (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 CQAS55 days to maturity
9 CQAS58 spikelet number
10 AQGS013 spikelet number
11 AQGS022 grain number
12 AQEO006 spikelet fertility
13 AQDQ044 seed weight
14 AQDQ045 seed weight
15 AQDQ046 plant height
16 AQDR006 1000-seed weight
17 CQAO12 1000-seed weight
18 CQAV8 osmotic adjustment capacity
19 AQEN004 blast disease resistance
20 CQAW17 root number
21 AQFR023 seedling vigor
22 AQFR037 seedling vigor
23 AQFR048 seedling vigor
24 AQFP012 culm length
25 AQFP032 culm length
26 AQCU153 spikelet number
27 AQCU186 days to heading
28 AQFW122 spikelet fertility
29 AQC016 penetrated to total root ratio
30 AQGS005 tiller number
31 AQGS014 spikelet number
32 AQEI079 leaf senescence
33 AQEI111 leaf senescence
34 CQE40 yield
35 AQFP018 culm strength

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Guo X L; Bai L R; Su C Q; Shi L R; Wang D W; Molecular cloning and expression of drought-induced protein 3 (DIP3) encoding a class III chitinase in upland rice. Genetics and molecular research : GMR 2013:12
PMID [24391034]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India