Rice gene details
Searching for LOC_Os05g18660 [OsFBDUF24 - F-box and DUF domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g18660.1 432 25 64 PF00646.25 F-box
2 LOC_Os05g18660.1 432 226 346 PF07762.6 DUF1618
3 LOC_Os05g18660.2 402 25 64 PF00646.25 F-box
4 LOC_Os05g18660.2 402 226 346 PF07762.6 DUF1618
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  1
N22 Root FC
  25
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  4

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009651 response to salt stress  
4 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007187 salicylic acid regimen (+)
3 EO:0007319 warm/hot air temperature regimen (+)
4 EO:0007332 cold air temperature regimen (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000280 recovery treatment from heat stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 CQAS55 days to maturity
9 CQAS58 spikelet number
10 AQEO006 spikelet fertility
11 AQDQ044 seed weight
12 AQDQ045 seed weight
13 AQDQ046 plant height
14 AQDR006 1000-seed weight
15 CQAO12 1000-seed weight
16 CQAV8 osmotic adjustment capacity
17 AQEN004 blast disease resistance
18 CQAW17 root number
19 AQFP012 culm length
20 AQFP032 culm length
21 AQCU153 spikelet number
22 AQCU186 days to heading
23 AQFW122 spikelet fertility
24 AQC016 penetrated to total root ratio
25 AQEI079 leaf senescence
26 AQEI111 leaf senescence
27 CQE40 yield
28 AQFP018 culm strength
29 AQE041 grain yield per panicle
30 AQGS009 panicle length
31 AQT005 panicle length
32 AQBK016 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Lan; Shen Rongxin; Chen Le-Tian; Liu Yao-Guang; Characterization of a novel DUF1618 gene family in rice. Journal of integrative plant biology 2014:56
PMID [24237627]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India