Rice gene details
Searching for LOC_Os05g20100 [glycerol-3-phosphate acyltransferase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g20100.1 538 328 439 PF01553.13 Acyltransferase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  3
N22 Root FC
  -61
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
 
IR64 Root FC
  -24

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 MCE:1000195 hypoxic environment (+)
3 MCE:1000330 nitrogen flushing (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 CQAS55 days to maturity
9 CQAS58 spikelet number
10 AQEO006 spikelet fertility
11 AQDQ044 seed weight
12 AQDQ045 seed weight
13 AQDQ046 plant height
14 AQDR006 1000-seed weight
15 CQAO12 1000-seed weight
16 CQAV8 osmotic adjustment capacity
17 AQEN004 blast disease resistance
18 CQAW17 root number
19 AQFP012 culm length
20 AQFP032 culm length
21 AQCU153 spikelet number
22 AQCU186 days to heading
23 AQFW122 spikelet fertility
24 AQC016 penetrated to total root ratio
25 AQEI079 leaf senescence
26 AQEI111 leaf senescence
27 CQE40 yield
28 AQFP018 culm strength
29 AQE041 grain yield per panicle
30 AQGS009 panicle length
31 AQT005 panicle length
32 AQBK016 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000559 long adventitious root (+)
2 MCP:1000560 short adventitious root (-)
3 PO:0005427 sclerenchyma (+)
4 PO:0005772 exodermis (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India