Rice gene details
Searching for LOC_Os05g23740 [DnaK family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g23740.1 690 52 647 PF00012.12 HSP70
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0019538 protein metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0006950 response to stress (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0006810 transport (RGAP)
7 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid  
2 GO:0009570 chloroplast stroma  
3 GO:0031969 chloroplast membrane  
4 GO:0005634 nucleus (RGAP)
5 GO:0009579 thylakoid (RGAP)
6 GO:0009536 plastid (RGAP)
7 GO:0005739 mitochondrion (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007162 continuous light regimen (+)
4 EO:0007173 warm/hot temperature regimen (+)
5 EO:0007332 cold air temperature regimen (+)
6 MCE:1000075 recovery treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 AQDQ044 seed weight
9 AQDQ045 seed weight
10 AQDQ046 plant height
11 AQDR006 1000-seed weight
12 CQAO12 1000-seed weight
13 CQAV8 osmotic adjustment capacity
14 AQEN004 blast disease resistance
15 CQAW17 root number
16 AQFP012 culm length
17 AQFP032 culm length
18 AQCU153 spikelet number
19 AQCU186 days to heading
20 AQFW122 spikelet fertility
21 AQC016 penetrated to total root ratio
22 AQEI079 leaf senescence
23 AQEI111 leaf senescence
24 CQE40 yield
25 AQFP018 culm strength
26 AQE041 grain yield per panicle
27 AQGS009 panicle length
28 AQT005 panicle length
29 AQBK016 days to heading
30 CQAS56 panicle length
31 CQAS59 spikelet density
32 AQEP016 seedling vigor

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000520 young inflorescence stage (+)
4 PO:0007041 inflorescence emergence from flag leaf sheath (+)
5 PO:0007617 5 post anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000085 lower shoot (+)
2 MCP:1000316 third leaf from base (+)
3 PO:0006340 adult leaf (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009010 seed (+)
7 PO:0009046 flower (+)
8 PO:0009049 inflorescence (+)
9 PO:0020104 leaf sheath (+)
10 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000069 variegated leaf (+)
2 TO:0000495 chlorophyll content (+)
3 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kim Sung-Ryul; An Gynheung; Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions. Journal of plant physiology 2013:
PMID [23394789]


Sarkar Neelam K; Kundnani Preeti; Grover Anil; Functional analysis of Hsp70 superfamily proteins of rice (Oryza sativa). Cell Stress & Chaperones 2012:
PMID [23264228]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India