Rice gene details
Searching for LOC_Os05g25770 [OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g25770.1 327 117 179 PF03106.7 WRKY
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  1
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009620 response to fungus  
4 GO:0009651 response to salt stress  
5 GO:0009725 response to hormone stimulus  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0009751 response to salicylic acid stimulus  
8 GO:0034201 response to oleic acid  
9 GO:0008150 biological_process (RGAP)
10 GO:0009058 biosynthetic process (RGAP)
11 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005730 nucleolus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007174 cold temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007196 light regimen (+)
9 EO:0007198 water environment (+)
10 EO:0007267 benzothiadiazole regimen (+)
11 EO:0007290 kinetin regimen (+)
12 EO:0007383 watering regimen (+)
13 EO:0007404 drought environment (+)
14 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
15 MCE:1000067 brassinolide (+)
16 MCE:1000133 stearic acid (+)
17 MCE:1000134 oleic acid (+)
18 MCE:1000135 glycerol (+)
19 MCE:1000277 Magnaporthe grisea race 007 (+)
20 MCE:1000287 recovery treatment from cold stress (+)
21 MCE:1000320 magnaporthe gresia race 102 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 AQDQ044 seed weight
9 AQDQ045 seed weight
10 AQDQ046 plant height
11 AQDR006 1000-seed weight
12 CQAO12 1000-seed weight
13 CQAV8 osmotic adjustment capacity
14 AQEN004 blast disease resistance
15 CQAW17 root number
16 AQFP012 culm length
17 AQFP032 culm length
18 AQCU153 spikelet number
19 AQCU186 days to heading
20 AQFW122 spikelet fertility
21 AQC016 penetrated to total root ratio
22 AQEI079 leaf senescence
23 AQEI111 leaf senescence
24 CQE40 yield
25 AQFP018 culm strength
26 AQE041 grain yield per panicle
27 AQGS009 panicle length
28 AQT005 panicle length
29 AQBK016 days to heading
30 CQAS56 panicle length
31 CQAS59 spikelet density
32 AQEP016 seedling vigor

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
3 MCP:1000521 mature plant stage (-)
4 PO:0007065 LP.05 five leaves visible (+)
5 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000362 fourth leaf from base (+)
2 PO:0006339 juvenile leaf (+)
3 PO:0006340 adult leaf (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009025 vascular leaf (+)
7 PO:0009049 inflorescence (+)
8 PO:0020039 leaf lamina (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000002 lesion number (+)
2 MCT:1000012 survival rate (+)
3 TO:0000019 seedling height (+)
4 TO:0000227 root length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Sun Lijun; Zhang Huijuan; Li Dayong; Huang Lei; Hong Yongbo; Ding Xin Shun; Nelson Richard S; Zhou Xueping; Song Fengming; Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea. Plant Molecular Biology 2012:
PMID [23103994]


2  Yang Xi; Yang Ya-Nan; Xue Liang-Jiao; Zou Mei-Juan; Liu Jian-Jing; Chen Fan; Xue Hong-Wei; Rice ABI5-like1 Regulates ABA and Auxin Responses by Affecting the Expression of ABRE-Containing Genes. Plant Physiology 2011:
PMID [21546455]


3  Tao Zeng; Kou Yanjun; Liu Hongbo; Li Xianghua; Xiao Jinghua; Wang Shiping; OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice. Journal of experimental botany 2011:62
PMID [21725029]


4  Jiang Chang-Jie; Shimono Masaki; Sugano Shoji; Kojima Mikiko; Yazawa Katsumi; Yoshida Riichiro; Inoue Haruhiko; Hayashi Nagao; Sakakibara Hitoshi; Takatsuji Hiroshi; Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction. Molecular plant-microbe interactions : MPMI 2010:23
PMID [20459318]


5  Jiang Chang-Jie; Shimono Masaki; Maeda Satoru; Inoue Haruhiko; Mori Masaki; Hasegawa Morifumi; Sugano Shoji; Takatsuji Hiroshi; Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice. Molecular Plant-Microbe Interactions 2009:22
PMID [19522564]


6  Ramamoorthy Rengasamy; Jiang Shu-Ye; Kumar Nadimuthu; Venkatesh Prasanna Nori; Ramachandran Srinivasan; A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments. Plant & Cell Physiology 2008:49
PMID [18413358]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India