Rice gene details
Searching for LOC_Os05g28210 [small hydrophilic plant seed protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g28210.1 96 1 91 PF00477.9 LEA_5
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  99
N22 Root FC
  20
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
 
IR64 Root FC
  6

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009628 response to abiotic stimulus  
2 GO:0009651 response to salt stress  
3 GO:0009737 response to abscisic acid stimulus  
4 GO:0071409 cellular response to cycloheximide  
5 GO:0000003 reproduction (RGAP)
6 GO:0009791 post-embryonic development (RGAP)
7 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (-)
4 MCE:1000038 cycloheximide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 AQDQ044 seed weight
9 AQDQ045 seed weight
10 AQDQ046 plant height
11 AQDR006 1000-seed weight
12 CQAO12 1000-seed weight
13 CQAV8 osmotic adjustment capacity
14 AQEN004 blast disease resistance
15 CQAW17 root number
16 AQFP012 culm length
17 AQFP032 culm length
18 AQCU153 spikelet number
19 AQCU186 days to heading
20 AQFW122 spikelet fertility
21 AQC016 penetrated to total root ratio
22 AQEI079 leaf senescence
23 AQEI111 leaf senescence
24 CQE40 yield
25 AQFP018 culm strength
26 AQE041 grain yield per panicle
27 AQGS009 panicle length
28 AQT005 panicle length
29 AQBK016 days to heading
30 CQAS56 panicle length
31 CQAS59 spikelet density
32 AQEP016 seedling vigor

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000213 5-6 days post-anthesis stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000005 cultured plant cell (+)
2 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 AAB40291 - --- LOC_Os05g28210 - -159 to -180 - S000299 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
2 AAB40291 - --- LOC_Os05g28210 - 323 to 345 - # Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
3 BAA04066 - --- LOC_Os05g28210 - 105 to -502 - Transient co-expression analysis
4 BAA83740 - --- LOC_Os05g28210 - - - - S000299 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
5 BAA83740 - --- LOC_Os05g28210 - -179 to -124 TSS Transient co-expression analysis
6 BAA83740 - --- LOC_Os05g28210 - -179 to -124 TSS Transient co-expression analysis
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Nakagawa H; Ohmiya K; Hattori T; A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid. The Plant journal 1996:9
PMID [8820608]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India