Rice gene details
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Searching for
LOC_Os05g28210
[small hydrophilic plant seed protein, putative, expressed
]
Basic information [Pfam DB]
Graphical representation of the protein domains
S. No.
Locus Id
Protein Length
Doman Start
Domain End
Pfam ID
Domain Name
1
LOC_Os05g28210.1
96
1
91
PF00477.9
LEA_5
The basic information is from RGAP and Pfam/InterPro databases
Gene model (download)
IR64
N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22InfloresenceFC
99
N22 Root FC
20
IR64 Flag-leaf FC
1
IR64InfloresenceFC
IR64 Root FC
6
Functional details
Molecular Function
S. No.
GO Id
GO Description
1
GO:0003674
molecular_function
(RGAP)
Biological process
S. No.
GO Id
GO Description
1
GO:0009628
response to abiotic stimulus
2
GO:0009651
response to salt stress
3
GO:0009737
response to abscisic acid stimulus
4
GO:0071409
cellular response to cycloheximide
5
GO:0000003
reproduction
(RGAP)
6
GO:0009791
post-embryonic development
(RGAP)
7
GO:0009719
response to endogenous stimulus
(RGAP)
Cellular component
S. No.
GO Id
GO Description
1
GO:0005575
cellular_component
(RGAP)
Environment details
S. No.
EO Id
EO Description
Presence(+) or absence(-) of gene expression /activity
1
EO:0007048
sodium chloride regimen
(
+
)
2
EO:0007105
abscisic acid regimen
(
+
)
3
EO:0007332
cold air temperature regimen
(
-
)
4
MCE:1000038
cycloheximide
(
+
)
Metabolic Pathway details
Not found
QTL details
S. No.
QTL Id
QTL Associated Trait
1
CQAX34
plant height
2
AQBK013
days to heading
3
CQAS60
seed number
4
CQAS61
seed set percent
5
CQAS64
seed number
6
CQAS62
1000-seed weight
7
DQC9
penetrated root number
8
AQDQ044
seed weight
9
AQDQ045
seed weight
10
AQDQ046
plant height
11
AQDR006
1000-seed weight
12
CQAO12
1000-seed weight
13
CQAV8
osmotic adjustment capacity
14
AQEN004
blast disease resistance
15
CQAW17
root number
16
AQFP012
culm length
17
AQFP032
culm length
18
AQCU153
spikelet number
19
AQCU186
days to heading
20
AQFW122
spikelet fertility
21
AQC016
penetrated to total root ratio
22
AQEI079
leaf senescence
23
AQEI111
leaf senescence
24
CQE40
yield
25
AQFP018
culm strength
26
AQE041
grain yield per panicle
27
AQGS009
panicle length
28
AQT005
panicle length
29
AQBK016
days to heading
30
CQAS56
panicle length
31
CQAS59
spikelet density
32
AQEP016
seedling vigor
Plant developmental stage / tissue details
Plant development stage
S. No.
PO Id
PO Description
Presence(+) or absence(-) of gene expression /activity
1
MCP:1000213
5-6 days post-anthesis stage
(
+
)
Plant tissue/organ
S. No.
PO Id
PO Description
Presence(+) or absence(-) of gene expression /activity
1
PO:0000005
cultured plant cell
(
+
)
2
PO:0009010
seed
(
+
)
Others
S. No.
PO Id
PO Description
Presence(+) or absence(-) of gene expression /activity
Not found
Trait details
Not found
Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No.
Primary rice gene loci
Interacting rice gene loci
Experiment type
Id
Domain name/N or C term
Amino acid involved in interaction
Id
Domain name/N or C term
Bases
involved in interaction
Reference point
cis-elements [PLACE Id]
1
AAB40291
-
---
LOC_Os05g28210
-
-159 to -180
-
S000299
Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
2
AAB40291
-
---
LOC_Os05g28210
-
323 to 345
-
#
Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
3
BAA04066
-
---
LOC_Os05g28210
-
105 to -502
-
Transient co-expression analysis
4
BAA83740
-
---
LOC_Os05g28210
-
- -
-
S000299
Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
5
BAA83740
-
---
LOC_Os05g28210
-
-179 to -124
TSS
Transient co-expression analysis
6
BAA83740
-
---
LOC_Os05g28210
-
-179 to -124
TSS
Transient co-expression analysis
TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]
1
Nakagawa H; Ohmiya K; Hattori T; A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid. The Plant journal 1996:9
PMID [
8820608
]
Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India