Rice gene details
Searching for LOC_Os05g29760 [ferrochelatase-2, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g29760.1 527 113 437 PF00762.11 Ferrochelatase
2 LOC_Os05g29760.2 527 113 437 PF00762.11 Ferrochelatase
3 LOC_Os05g29760.3 393 8 303 PF00762.11 Ferrochelatase
4 LOC_Os05g29760.4 318 1 228 PF00762.11 Ferrochelatase
5 LOC_Os05g29760.5 318 1 228 PF00762.11 Ferrochelatase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  -2
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000351 5-aminolevulinic acid (+)
2 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5461 betanidin degradation

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 AQDQ044 seed weight
9 AQDQ045 seed weight
10 AQDQ046 plant height
11 AQDR006 1000-seed weight
12 CQAO12 1000-seed weight
13 CQAV8 osmotic adjustment capacity
14 AQEN004 blast disease resistance
15 CQAW17 root number
16 AQFP012 culm length
17 AQFP032 culm length
18 AQCU153 spikelet number
19 AQCU186 days to heading
20 AQFW122 spikelet fertility
21 AQC016 penetrated to total root ratio
22 AQEI079 leaf senescence
23 AQEI111 leaf senescence
24 CQE40 yield
25 AQFP018 culm strength
26 AQE041 grain yield per panicle
27 AQGS009 panicle length
28 AQT005 panicle length
29 AQBK016 days to heading
30 CQAS56 panicle length
31 CQAS59 spikelet density
32 AQEP016 seedling vigor

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India