Rice gene details
Searching for LOC_Os05g31670 [AWPM-19-like membrane family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g31670.1 174 14 143 PF05512.3 AWPM-19
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  33
N22 Root FC
  48
IR64 Flag-leaf FC
  7
IR64InfloresenceFC
  12
IR64 Root FC
  27

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009651 response to salt stress  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 AQDQ044 seed weight
9 AQDQ045 seed weight
10 AQDQ046 plant height
11 AQDR006 1000-seed weight
12 CQAO12 1000-seed weight
13 CQAV8 osmotic adjustment capacity
14 AQEN004 blast disease resistance
15 CQAW17 root number
16 AQCU153 spikelet number
17 AQCU186 days to heading
18 AQFW122 spikelet fertility
19 AQC016 penetrated to total root ratio
20 AQFP018 culm strength
21 AQE041 grain yield per panicle
22 AQGS009 panicle length
23 AQT005 panicle length
24 AQBK016 days to heading
25 CQAS56 panicle length
26 CQAS59 spikelet density
27 AQEP016 seedling vigor
28 AQAX004 carbohydrate content
29 AQCV005 grain length
30 AQCV006 grain length
31 AQCV019 grain length to width ratio
32 AQCV020 grain length to width ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007014 booting (+)
3 PO:0007022 imbibition (+)
4 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009009 plant embryo (+)
4 PO:0009025 vascular leaf (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0020104 leaf sheath (+)
8 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Rerksiri Wirat; Zhang Xianwen; Xiong Hairong; Chen Xinbo; Expression and promoter analysis of six heat stress-inducible genes in rice. The Scientific World Journal 2013:2013
PMID [24459431]


Zheng Xingnan; Chen Bo; Lu Guojun; Han Bin; Overexpression of a NAC transcription factor enhances rice drought and salt tolerance. Biochemical and Biophysical Research Communications 2009:379
PMID [19135985]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India