Rice gene details
Searching for LOC_Os05g31910 [white-brown complex homolog protein 16, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g31910.1 615 95 263 PF00005.19 ABC_tran
2 LOC_Os05g31910.2 615 95 263 PF00005.19 ABC_tran
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -9
N22 Root FC
  -5
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  3
IR64 Root FC
  -3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009651 response to salt stress  
4 GO:0009733 response to auxin stimulus  
5 GO:0009735 response to cytokinin stimulus  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0009739 response to gibberellin stimulus  
8 GO:0009741 response to brassinosteroid stimulus  
9 GO:0009753 response to jasmonic acid stimulus  
10 GO:0010555 response to mannitol stimulus  
11 GO:0006810 transport (RGAP)
12 GO:0009987 cellular process (RGAP)
13 GO:0009056 catabolic process (RGAP)
14 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007332 cold air temperature regimen (+)
10 MCE:1000023 benzyl aminopurine (BPA) (+)
11 MCE:1000044 mannitol (+)
12 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
13 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAX34 plant height
2 AQBK013 days to heading
3 CQAS60 seed number
4 CQAS61 seed set percent
5 CQAS64 seed number
6 CQAS62 1000-seed weight
7 DQC9 penetrated root number
8 AQDQ044 seed weight
9 AQDQ045 seed weight
10 AQDQ046 plant height
11 AQDR006 1000-seed weight
12 CQAO12 1000-seed weight
13 CQAV8 osmotic adjustment capacity
14 AQEN004 blast disease resistance
15 CQAW17 root number
16 AQCU153 spikelet number
17 AQCU186 days to heading
18 AQFW122 spikelet fertility
19 AQC016 penetrated to total root ratio
20 AQFP018 culm strength
21 AQE041 grain yield per panicle
22 AQGS009 panicle length
23 AQT005 panicle length
24 AQBK016 days to heading
25 CQAS56 panicle length
26 CQAS59 spikelet density
27 AQEP016 seedling vigor
28 AQAX004 carbohydrate content
29 AQCV005 grain length
30 AQCV006 grain length
31 AQCV019 grain length to width ratio
32 AQCV020 grain length to width ratio
33 AQBC059 tiller angle
34 AQBC060 tiller angle
35 AQBC061 tiller angle
36 AQBF003 root thickness
37 AQBF005 root length
38 CQL5 relative root length
39 CQS8 seminal root length
40 AQBX012 panicle weight
41 AQBX013 panicle weight
42 AQBX031 panicle weight
43 AQEA083 plant height
44 AQEA084 plant height
45 AQEA085 plant height
46 AQEA086 plant height
47 AQEA087 plant height
48 AQEA088 plant height
49 AQEA089 plant height
50 AQEA090 plant height
51 AQEA091 plant height
52 AQEA092 plant height
53 AQEA093 plant height
54 CQQ26 root thickness
55 DQE50 relative water content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India