Rice gene details
Searching for LOC_Os05g33040 [cyclin, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g33040.1 237 36 171 PF08613.3 Cyclin
2 LOC_Os05g33040.2 237 36 171 PF08613.3 Cyclin
3 LOC_Os05g33040.3 237 36 171 PF08613.3 Cyclin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -9
N22InfloresenceFC
  -2
N22 Root FC
  -2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0016301 kinase activity (RGAP)
Biological process
Not found
1 GO:0006464 protein modification process (RGAP)
2 GO:0007049 cell cycle (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS60 seed number
3 CQAS61 seed set percent
4 CQAS64 seed number
5 CQAS62 1000-seed weight
6 DQC9 penetrated root number
7 AQEN004 blast disease resistance
8 CQAW17 root number
9 AQC016 penetrated to total root ratio
10 AQFP018 culm strength
11 AQBK016 days to heading
12 CQAS56 panicle length
13 CQAS59 spikelet density
14 AQEP016 seedling vigor
15 AQAX004 carbohydrate content
16 AQBX012 panicle weight
17 AQBX013 panicle weight
18 AQBX031 panicle weight
19 AQEA083 plant height
20 AQEA084 plant height
21 AQEA085 plant height
22 AQEA086 plant height
23 AQEA087 plant height
24 AQEA088 plant height
25 AQEA089 plant height
26 AQEA090 plant height
27 AQEA091 plant height
28 AQEA092 plant height
29 AQEA093 plant height
30 CQQ26 root thickness
31 DQE50 relative water content
32 AQEE015 head rice
33 AQEE019 cracked grain percentage
34 CQQ2 root weight
35 CQAN11 days to heading
36 CQAN14 days to heading
37 CQB17 seed set percent
38 DQC16 penetrated to total root ratio
39 AQAP023 brown planthopper resistance
40 AQCU145 leaf width
41 AQDR018 grain yield per panicle
42 AQDQ047 grain yield per plant
43 AQDQ048 grain yield per plant
44 AQDQ049 seed weight
45 AQDQ050 seed weight
46 AQCC003 stigma exsertion
47 AQE042 grain yield per panicle

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0005052 plant callus (+)
3 PO:0006339 juvenile leaf (+)
4 PO:0006340 adult leaf (+)
5 PO:0009005 root (+)
6 PO:0009047 stem (+)
7 PO:0009051 spikelet (+)
8 PO:0020034 coleorhiza (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Deng Minjuan; Hu Bin; Xu Lei; Liu Yang; Wang Fang; Zhao Hongyu; Wei Xijuan; Wang Jichao; Yi Keke; OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.). Plant molecular biology 2014:86
PMID [25315105]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India