Rice gene details
Searching for LOC_Os05g33730 [gibberellin receptor GID1L2, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g33730.1 355 116 330 PF07859.5 Abhydrolase_3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  1
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0016787 hydrolase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009414 response to water deprivation  
3 GO:0009620 response to fungus  
4 GO:0009651 response to salt stress  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0030912 response to deep water  
7 GO:0007165 signal transduction (RGAP)
8 GO:0009719 response to endogenous stimulus (RGAP)
9 GO:0008152 metabolic process (RGAP)
10 GO:0009058 biosynthetic process (RGAP)
11 GO:0005975 carbohydrate metabolic process (RGAP)
12 GO:0009653 anatomical structure morphogenesis (RGAP)
13 GO:0009908 flower development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007048 sodium chloride regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007226 Magnaporthe grisea (+)
5 EO:0007332 cold air temperature regimen (+)
6 EO:0007404 drought environment (+)
7 MCE:1000010 submergence stress (+)
8 MCE:1000016 polyethylene glycol (PEG) treatment (+)
9 MCE:1000069 dessication/dehydration stress (+)
10 MCE:1000075 recovery treatment (+)
11 MCE:1000303 recovery treatment from submergence stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS60 seed number
3 CQAS61 seed set percent
4 CQAS64 seed number
5 CQAS62 1000-seed weight
6 DQC9 penetrated root number
7 AQEN004 blast disease resistance
8 CQAW17 root number
9 AQC016 penetrated to total root ratio
10 AQFP018 culm strength
11 AQBK016 days to heading
12 CQAS56 panicle length
13 CQAS59 spikelet density
14 AQEP016 seedling vigor
15 AQAX004 carbohydrate content
16 CQQ26 root thickness
17 DQE50 relative water content
18 AQEE015 head rice
19 AQEE019 cracked grain percentage
20 CQAN11 days to heading
21 CQAN14 days to heading
22 CQB17 seed set percent
23 DQC16 penetrated to total root ratio
24 AQAP023 brown planthopper resistance
25 AQCU145 leaf width
26 AQDR018 grain yield per panicle
27 AQDQ047 grain yield per plant
28 AQDQ048 grain yield per plant
29 AQDQ049 seed weight
30 AQDQ050 seed weight
31 AQCC003 stigma exsertion
32 AQE042 grain yield per panicle
33 AQAB022 large vascular bundle number
34 AQAG018 tiller number
35 CQAB45 plant height
36 CQAB46 plant height
37 CQAB47 plant height
38 CQAB48 plant height
39 CQAB49 plant height
40 CQV10 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 PO:0001053 3 leaf fully expanded (+)
4 PO:0007041 inflorescence emergence from flag leaf sheath (+)
5 PO:0007065 LP.05 five leaves visible (+)
6 PO:0007089 stem elongation (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
2 PO:0000036 leaf vascular system (+)
3 PO:0004001 bulliform cell (+)
4 PO:0005427 sclerenchyma (+)
5 PO:0006016 leaf epidermis (+)
6 PO:0008037 seedling (+)
7 PO:0009006 shoot system (+)
8 PO:0020039 leaf lamina (+)
9 PO:0020142 stem internode (+)
10 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000022 lesion size (+)
2 MCT:1000039 water loss (+)
3 MCT:1000058 wilting ratio (+)
4 MCT:1000110 starch accumulation (+)
5 MCT:1000218 hydrogen peroxide accumulation (+)
6 MCT:1000319 galactose content (+)
7 MCT:1000402 stomata length (+)
8 MCT:1000403 stomata width (+)
9 MCT:1000433 percentage of open stomata (+)
10 MCT:1000501 percentage of closed stomata (+)
11 MCT:1000525 delayed senescence (+)
12 MCT:1000596 defective sclerenchyma (+)
13 MCT:1000597 stomata guard cell index (+)
14 TO:0000019 seedling height (+)
15 TO:0000040 panicle length (+)
16 TO:0000085 leaf rolling (+)
17 TO:0000135 leaf length (+)
18 TO:0000136 relative water content (+)
19 TO:0000181 seed weight (+)
20 TO:0000207 plant height (+)
21 TO:0000227 root length (+)
22 TO:0000272 plant survivability (+)
23 TO:0000300 glucose content (+)
24 TO:0000328 sucrose content (+)
25 TO:0000346 tiller number (+)
26 TO:0000360 leaf elongation rate (+)
27 TO:0000370 leaf width (+)
28 TO:0000478 abscisic acid concentration (+)
29 TO:0000495 chlorophyll content (+)
30 TO:0000504 leaf temperature (+)
31 TO:0000566 stomatal frequency (+)
32 TO:0000696 starch content (+)
33 TO:0000731 lignin content (+)
34 TO:0002667 abscisic acid content (+)
35 TO:0002684 plant cell size (+)
36 TO:0006005 fructose content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


2  Shan Chi; Mei Zhiling; Duan Jianli; Chen Haiying; Feng Huafeng; Cai Weiming; OsGA2ox5, a Gibberellin Metabolism Enzyme, Is Involved in Plant Growth, the Root Gravity Response and Salt Stress. PloS one 2014:9
PMID [24475234]


3  Iwamoto M; Baba-Kasai A; Kiyota S; Hara N; Takano M; ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice. Plant, Cell & Environment 2010:
PMID [20040065]


4  Yaish Mahmoud W; El-Kereamy Ashraf; Zhu Tong; Beatty Perrin H; Good Allen G; Bi Yong-Mei; Rothstein Steven J; The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS genetics 2010:6
PMID [20838584]


5  Tanaka Naoki; Matsuoka Makoto; Kitano Hidemi; Asano Takayuki; Kaku Hisatoshi; Komatsu Setsuko; gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack. Plant, Cell & Environment 2006:29
PMID [17080612]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India