Rice gene details
Searching for LOC_Os05g34290 [glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g34290.1 247 17 232 PF05023.6 Phytochelatin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0016787 hydrolase activity (RGAP)
4 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0046685 response to arsenic-containing substance  
2 GO:0006810 transport (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0006950 response to stress (RGAP)
6 GO:0009607 response to biotic stimulus (RGAP)
7 GO:0005975 carbohydrate metabolic process (RGAP)
8 GO:0009056 catabolic process (RGAP)
9 GO:0019748 secondary metabolic process (RGAP)
10 GO:0008150 biological_process (RGAP)
11 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
12 GO:0009058 biosynthetic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000345 sodium arsenite (Na2HAsO2) (+)
2 MCE:1000346 sodium selenite (Na2O3Se) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS60 seed number
3 CQAS61 seed set percent
4 CQAS64 seed number
5 CQAS62 1000-seed weight
6 DQC9 penetrated root number
7 AQEN004 blast disease resistance
8 CQAW17 root number
9 AQC016 penetrated to total root ratio
10 AQFP018 culm strength
11 AQBK016 days to heading
12 CQAS56 panicle length
13 CQAS59 spikelet density
14 AQEP016 seedling vigor
15 CQQ26 root thickness
16 DQE50 relative water content
17 AQEE015 head rice
18 AQEE019 cracked grain percentage
19 CQAN11 days to heading
20 CQAN14 days to heading
21 CQB17 seed set percent
22 DQC16 penetrated to total root ratio
23 AQAP023 brown planthopper resistance
24 AQCU145 leaf width
25 AQDR018 grain yield per panicle
26 AQDQ047 grain yield per plant
27 AQDQ048 grain yield per plant
28 AQDQ049 seed weight
29 AQDQ050 seed weight
30 AQCC003 stigma exsertion
31 AQE042 grain yield per panicle
32 AQAB022 large vascular bundle number
33 AQAG018 tiller number
34 CQAB45 plant height
35 CQAB46 plant height
36 CQAB47 plant height
37 CQAB48 plant height
38 CQAB49 plant height
39 CQV10 plant height
40 AQFD005 tiller number
41 CQE41 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000649 phytochelatin synthase activity (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kumar Amit; Singh Rana Pratap; Singh Pradyumna Kumar; Awasthi Surabhi; Chakrabarty Debasis; Trivedi Prabodh Kumar; Tripathi Rudra Deo; Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.). Ecotoxicology (London, England) 2014:23
PMID [24985886]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India