Rice gene details
Searching for LOC_Os05g38150 [amino acid kinase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g38150.1 717 15 260 PF00696.20 AA_kinase
2 LOC_Os05g38150.2 717 15 260 PF00696.20 AA_kinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  2
N22 Root FC
  1
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009651 response to salt stress  
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0006950 response to stress (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0007275 multicellular organismal development (RGAP)
9 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005737 cytoplasm (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007174 cold temperature regimen (+)
4 EO:0007332 cold air temperature regimen (+)
5 EO:0007404 drought environment (+)
6 MCE:1000016 polyethylene glycol (PEG) treatment (+)
7 MCE:1000075 recovery treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CITRULBIO-PWY citrulline biosynthesis
2 DRIBOPMET-PWY (deoxy)ribose phosphate degradation
3 PROLINE-SYN2-PWY proline biosynthesis II
4 PROSYN-PWY proline biosynthesis I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS62 1000-seed weight
3 CQAW17 root number
4 AQFP018 culm strength
5 AQBK016 days to heading
6 CQAS56 panicle length
7 CQAS59 spikelet density
8 AQEP016 seedling vigor
9 CQQ26 root thickness
10 DQE50 relative water content
11 AQEE015 head rice
12 AQEE019 cracked grain percentage
13 AQAP023 brown planthopper resistance
14 AQCU145 leaf width
15 AQDR018 grain yield per panicle
16 AQDQ047 grain yield per plant
17 AQDQ048 grain yield per plant
18 AQDQ049 seed weight
19 AQDQ050 seed weight
20 AQE042 grain yield per panicle
21 CQAB45 plant height
22 CQAB46 plant height
23 CQAB47 plant height
24 CQAB48 plant height
25 CQAB49 plant height
26 CQV10 plant height
27 AQFD005 tiller number
28 AQCO006 spikelet fertility
29 AQCP006 spikelet fertility
30 CQX28 internode length
31 CQAG22 setback
32 AQGI228 total biomass yield
33 AQHR014 tiller number
34 AQAD001 sheath blight disease resistance
35 AQAG034 1000-seed weight
36 AQAI021 large vascular bundle number
37 AQCQ022 grain yield per plant
38 CQAJ20 grain number
39 AQBK015 days to heading
40 AQBK018 days to heading
41 CQAA19 relative phosphorus distribution between shoot and root
42 AQDZ002 lodging incidence
43 AQDZ013 lodging incidence
44 CQAS53 plant height
45 AQAK029 1000-seed weight
46 AQCF007 1000-seed weight
47 AQCF018 1000-seed weight
48 AQCF032 filled grain number
49 AQCF033 spikelet number
50 AQCF034 1000-seed weight
51 AQBK017 days to heading
52 CQAA18 relative phosphorus distribution between shoot and root
53 AQFE063 seed set percent

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000244 prophyll emergence stage (+)
2 MCP:1000518 seedling development stage (+)
3 PO:0007115 LP.04 four leaves visible (+)
4 PO:0007130 B reproductive growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0006339 juvenile leaf (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009025 vascular leaf (+)
6 PO:0009047 stem (+)
7 PO:0009049 inflorescence (+)
8 PO:0020103 flag leaf (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Luo Chengke; Guo Chiming; Wang Wujing; Wang Liangjiang; Chen Liang; Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice. Plant cell reports 2014:33
PMID [24247850]


Wei Shuya; Hu Wei; Deng Xiaomin; Zhang Yingying; Liu Xiaodong; Zhao Xudong; Luo Qingchen; Jin Zhengyi; Li Yin; Zhou Shiyi; Sun Tao; Wang Lianzhe; Yang Guangxiao; He Guangyuan; A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility. BMC plant biology 2014:14
PMID [24884869]


Xiong Haiyan; Li Jinjie; Liu Pengli; Duan Junzhi; Zhao Yan; Guo Xiao; Li Yang; Zhang Hongliang; Ali Jauhar; Li Zichao; Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice. PloS one 2014:9
PMID [24667379]


Xu Peipei; Cai Weiming; RAN1 is involved in plant cold resistance and development in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24790113]


Yang An; Dai Xiaoyan; Zhang Wen-Hao; A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. Journal of Experimental Botany 2012:
PMID [22301384]


Du Hao; Liu Linhong; You Lei; Yang Mei; He Yubing; Li Xianghua; Xiong Lizhong; Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice. Plant Molecular Biology 2011:
PMID [22038091]


Song Shi-Yong; Chen Ying; Chen Jie; Dai Xiao-Yan; Zhang Wen-Hao; Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress. Planta 2011:
PMID [21448719]


Du Hao; Wang Nili; Cui Fei; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice. Plant Physiology 2010:154
PMID [20852032]


Sun Shu-Jing; Guo Shu-Qiao; Yang Xia; Bao Yong-Mei; Tang Hai-Juan; Sun Hui; Huang Ji; Zhang Hong-Sheng; Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice. Journal of Experimental Botany 2010:61
PMID [20460361]


10  Gao Chenxi; Han Bin; Evolutionary and expression study of the aldehyde dehydrogenase (ALDH) gene superfamily in rice (Oryza sativa). Gene 2009:431
PMID [19071198]


11  Huang Ji; Sun Shu-Jing; Xu Dong-Qing; Yang Xia; Bao Yong-Mei; Wang Zhou-Fei; Tang Hai-Juan; Zhang Hongsheng; Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245. Biochemical and Biophysical Research Communications 2009:389
PMID [19751706]


12  Xiang Yong; Huang Yuemin; Xiong Lizhong; Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement. Plant Physiology 2007:144
PMID [17535819]


13  Morsy Mustafa R; Almutairi Abeer M; Gibbons James; Yun Song Joon; de Los Reyes Benildo G; The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature. Gene 2005:344
PMID [15656983]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India