Rice gene details
Searching for LOC_Os05g38290 [protein phosphatase 2C, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g38290.1 318 110 305 PF00481.13 PP2C
2 LOC_Os05g38290.2 417 90 404 PF00481.13 PP2C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  8
N22InfloresenceFC
  3
N22 Root FC
  -5
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  13

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0016787 hydrolase activity (RGAP)
Biological process
Not found
1 GO:0006464 protein modification process (RGAP)
2 GO:0008152 metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS62 1000-seed weight
3 CQAW17 root number
4 AQFP018 culm strength
5 AQBK016 days to heading
6 CQAS56 panicle length
7 CQAS59 spikelet density
8 AQEP016 seedling vigor
9 CQQ26 root thickness
10 DQE50 relative water content
11 AQEE015 head rice
12 AQEE019 cracked grain percentage
13 AQAP023 brown planthopper resistance
14 AQCU145 leaf width
15 AQDR018 grain yield per panicle
16 AQDQ047 grain yield per plant
17 AQDQ048 grain yield per plant
18 AQDQ049 seed weight
19 AQDQ050 seed weight
20 AQE042 grain yield per panicle
21 CQAB45 plant height
22 CQAB46 plant height
23 CQAB47 plant height
24 CQAB48 plant height
25 CQAB49 plant height
26 CQV10 plant height
27 AQFD005 tiller number
28 AQCO006 spikelet fertility
29 AQCP006 spikelet fertility
30 CQX28 internode length
31 CQAG22 setback
32 AQGI228 total biomass yield
33 AQHR014 tiller number
34 AQAD001 sheath blight disease resistance
35 AQAG034 1000-seed weight
36 AQAI021 large vascular bundle number
37 AQCQ022 grain yield per plant
38 CQAJ20 grain number
39 AQBK015 days to heading
40 AQBK018 days to heading
41 CQAA19 relative phosphorus distribution between shoot and root
42 AQDZ002 lodging incidence
43 AQDZ013 lodging incidence
44 CQAS53 plant height
45 AQAK029 1000-seed weight
46 AQCF007 1000-seed weight
47 AQCF018 1000-seed weight
48 AQCF032 filled grain number
49 AQCF033 spikelet number
50 AQCF034 1000-seed weight
51 AQBK017 days to heading
52 CQAA18 relative phosphorus distribution between shoot and root
53 AQFE063 seed set percent

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0009025 vascular leaf (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 LOC_Os05g12260 - LOC_Os05g38290 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


Xiang Yong; Tang Ning; Du Hao; Ye Haiyan; Xiong Lizhong; Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiology 2008:148
PMID [18931143]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India