Rice gene details
Searching for LOC_Os05g39540 [metal cation transporter, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g39540.1 363 39 359 PF02535.14 Zip
2 LOC_Os05g39540.2 270 39 261 PF02535.14 Zip
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -2
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  3
IR64 Root FC
  -3

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0009607 response to biotic stimulus (RGAP)
4 GO:0008150 biological_process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)
3 GO:0005886 plasma membrane (RGAP)
4 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000173 cadmium nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS62 1000-seed weight
3 CQAW17 root number
4 AQFP018 culm strength
5 AQBK016 days to heading
6 CQAS56 panicle length
7 CQAS59 spikelet density
8 AQEP016 seedling vigor
9 DQE50 relative water content
10 AQEE015 head rice
11 AQEE019 cracked grain percentage
12 AQDR018 grain yield per panicle
13 AQDQ047 grain yield per plant
14 AQDQ048 grain yield per plant
15 AQDQ049 seed weight
16 AQDQ050 seed weight
17 AQE042 grain yield per panicle
18 AQCO006 spikelet fertility
19 AQCP006 spikelet fertility
20 CQX28 internode length
21 CQAG22 setback
22 AQGI228 total biomass yield
23 AQHR014 tiller number
24 AQAD001 sheath blight disease resistance
25 AQAG034 1000-seed weight
26 AQAI021 large vascular bundle number
27 AQCQ022 grain yield per plant
28 CQAJ20 grain number
29 AQBK015 days to heading
30 AQBK018 days to heading
31 CQAA19 relative phosphorus distribution between shoot and root
32 AQDZ002 lodging incidence
33 AQDZ013 lodging incidence
34 CQAS53 plant height
35 AQAK029 1000-seed weight
36 AQCF007 1000-seed weight
37 AQCF018 1000-seed weight
38 AQCF032 filled grain number
39 AQCF033 spikelet number
40 AQCF034 1000-seed weight
41 AQBK017 days to heading
42 CQAA18 relative phosphorus distribution between shoot and root
43 AQFE063 seed set percent
44 AQX002 primary branch
45 AQA032 root volume
46 AQBC045 tiller number
47 AQBC046 tiller number
48 CQAI35 root volume
49 DQE23 leaf rolling
50 DQE24 leaf rolling
51 DQE25 leaf rolling
52 DQE6 leaf drying
53 CQAE10 plant height
54 AQAP043 brown planthopper resistance
55 AQCE028 primary branch length
56 AQCU197 plant height
57 AQCU212 leaf length
58 AQFW218 leaf width
59 AQFU013 milled rice ratio
60 AQFD012 tiller bud dormancy
61 AQFD015 tiller bud dormancy

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sasaki Akimasa; Yamaji Naoki; Ma Jian Feng; Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice. Journal of experimental botany 2014:65
PMID [25151617]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India