Rice gene details
Searching for LOC_Os05g40190 [thioredoxin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g40190.1 136 22 126 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  3
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006464 protein modification process (RGAP)
3 GO:0007154 cell communication (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0009536 plastid (RGAP)
4 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007196 light regimen (-)
2 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS62 1000-seed weight
3 CQAW17 root number
4 AQFP018 culm strength
5 AQBK016 days to heading
6 CQAS56 panicle length
7 CQAS59 spikelet density
8 AQEP016 seedling vigor
9 DQE50 relative water content
10 AQEE015 head rice
11 AQEE019 cracked grain percentage
12 AQDQ047 grain yield per plant
13 AQDQ048 grain yield per plant
14 AQDQ049 seed weight
15 AQDQ050 seed weight
16 AQE042 grain yield per panicle
17 AQCO006 spikelet fertility
18 AQCP006 spikelet fertility
19 CQX28 internode length
20 CQAG22 setback
21 AQGI228 total biomass yield
22 AQHR014 tiller number
23 AQAD001 sheath blight disease resistance
24 AQAG034 1000-seed weight
25 AQAI021 large vascular bundle number
26 AQCQ022 grain yield per plant
27 CQAJ20 grain number
28 AQBK015 days to heading
29 AQBK018 days to heading
30 CQAA19 relative phosphorus distribution between shoot and root
31 AQDZ002 lodging incidence
32 AQDZ013 lodging incidence
33 CQAS53 plant height
34 AQCF007 1000-seed weight
35 AQCF018 1000-seed weight
36 AQCF032 filled grain number
37 AQCF033 spikelet number
38 AQCF034 1000-seed weight
39 AQBK017 days to heading
40 CQAA18 relative phosphorus distribution between shoot and root
41 AQFE063 seed set percent
42 AQX002 primary branch
43 AQA032 root volume
44 AQBC045 tiller number
45 AQBC046 tiller number
46 CQAI35 root volume
47 DQE23 leaf rolling
48 DQE24 leaf rolling
49 DQE25 leaf rolling
50 DQE6 leaf drying
51 CQAE10 plant height
52 AQAP043 brown planthopper resistance
53 AQCE028 primary branch length
54 AQCU197 plant height
55 AQCU212 leaf length
56 AQFW218 leaf width
57 AQFU013 milled rice ratio
58 AQFD012 tiller bud dormancy
59 AQFD015 tiller bud dormancy
60 AQAK012 filled grain number
61 CQAG23 setback
62 AQBV012 leaf angle
63 AQBV013 tiller angle
64 AQBV014 leaf angle

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007015 radicle emergence (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0020032 plumule (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India