|
Searching for LOC_Os05g40384
[cytochrome P450, putative, expressed ] |
|
|
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os05g40384.1 |
578 |
110 |
532 |
PF00067.14 |
p450 |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009737 |
response to abscisic acid stimulus |
|
2 |
GO:0008152 |
metabolic process |
(RGAP) |
|
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005623 |
cell |
(RGAP) |
|
|
Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007105 |
abscisic acid regimen |
(+) |
2 |
MCE:1000069 |
dessication/dehydration stress |
(+) |
|
Metabolic Pathway details
QTL details
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Bases
involved in interaction |
Reference point |
cis-elements [PLACE Id] |
1 |
LOC_Os04g52090 |
- |
--- |
LOC_Os05g40384 |
- |
1 to -2498 |
TrSS |
|
Transcriptional activity assay |
|
|
|
TSS - Transcriptional start site
TrSS - Translational start site |
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS |
|
|
|
Related publications [Sorted by year] |
|
1 |
Yaish Mahmoud W; El-Kereamy Ashraf; Zhu Tong; Beatty Perrin H; Good Allen G; Bi Yong-Mei; Rothstein Steven J; The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS genetics 2010:6
PMID [20838584]
 |
|
|
|