Rice gene details
Searching for LOC_Os05g41580 [calcium-transporting ATPase, plasma membrane-type, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g41580.1 1074 114 193 PF00690.18 Cation_ATPase_N
2 LOC_Os05g41580.1 1074 207 448 PF00122.12 E1-E2_ATPase
3 LOC_Os05g41580.1 1074 452 778 PF00702.18 Hydrolase
4 LOC_Os05g41580.1 1074 839 1049 PF00689.13 Cation_ATPase_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  -4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0008219 cell death (RGAP)
4 GO:0006950 response to stress (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0009607 response to biotic stimulus (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0009056 catabolic process (RGAP)
9 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
Not found
1 GO:0005773 vacuole (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS62 1000-seed weight
3 AQFP018 culm strength
4 AQBK016 days to heading
5 AQEP016 seedling vigor
6 AQEE015 head rice
7 AQEE019 cracked grain percentage
8 AQE042 grain yield per panicle
9 AQCO006 spikelet fertility
10 AQCP006 spikelet fertility
11 CQX28 internode length
12 AQGI228 total biomass yield
13 AQHR014 tiller number
14 AQAD001 sheath blight disease resistance
15 AQAG034 1000-seed weight
16 AQAI021 large vascular bundle number
17 AQCQ022 grain yield per plant
18 CQAJ20 grain number
19 AQBK015 days to heading
20 AQBK018 days to heading
21 CQAA19 relative phosphorus distribution between shoot and root
22 AQDZ002 lodging incidence
23 AQDZ013 lodging incidence
24 CQAS53 plant height
25 AQCF007 1000-seed weight
26 AQCF018 1000-seed weight
27 AQCF032 filled grain number
28 AQCF033 spikelet number
29 AQCF034 1000-seed weight
30 AQBK017 days to heading
31 CQAA18 relative phosphorus distribution between shoot and root
32 AQFE063 seed set percent
33 AQX002 primary branch
34 CQAE10 plant height
35 AQAP043 brown planthopper resistance
36 AQCE028 primary branch length
37 AQCU197 plant height
38 AQCU212 leaf length
39 AQFW218 leaf width
40 AQFU013 milled rice ratio
41 AQFD012 tiller bud dormancy
42 AQFD015 tiller bud dormancy
43 CQAG23 setback
44 AQBV012 leaf angle
45 AQBV013 tiller angle
46 AQBV014 leaf angle
47 AQHF007 leaf width
48 AQBC050 panicle tiller ratio
49 AQBC051 panicle tiller ratio
50 AQBC052 panicle tiller ratio
51 AQEA231 days to heading
52 AQEA232 days to heading
53 AQEA233 days to heading
54 AQEA234 days to heading
55 AQEA235 days to heading
56 AQEA236 days to heading
57 AQEA237 days to heading
58 AQEP005 seedling vigor
59 AQDX008 osmotic adjustment capacity

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamada Nana; Theerawitaya Cattarin; Cha-Um Suriyan; Kirdmanee Chalermpol; Takabe Teruhiro; Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars. Protoplasma 2014:
PMID [24482191]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India