Rice gene details
Searching for LOC_Os05g42150 [OsGH3.4 - Probable indole-3-acetic acid-amido synthetase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g42150.1 630 25 585 PF03321.5 GH3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -5
N22 Root FC
  -22
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009733 response to auxin stimulus  
3 GO:0009719 response to endogenous stimulus (RGAP)
4 GO:0016043 cellular component organization (RGAP)
5 GO:0009653 anatomical structure morphogenesis (RGAP)
6 GO:0016049 cell growth (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0008150 biological_process (RGAP)
9 GO:0007165 signal transduction (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 MCE:1000103 fluridone (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS62 1000-seed weight
3 AQFP018 culm strength
4 AQBK016 days to heading
5 AQEP016 seedling vigor
6 AQEE015 head rice
7 AQEE019 cracked grain percentage
8 AQE042 grain yield per panicle
9 AQCO006 spikelet fertility
10 AQCP006 spikelet fertility
11 CQX28 internode length
12 AQGI228 total biomass yield
13 AQHR014 tiller number
14 AQAD001 sheath blight disease resistance
15 AQAG034 1000-seed weight
16 AQAI021 large vascular bundle number
17 AQCQ022 grain yield per plant
18 CQAJ20 grain number
19 AQBK015 days to heading
20 AQBK018 days to heading
21 CQAA19 relative phosphorus distribution between shoot and root
22 AQDZ002 lodging incidence
23 AQDZ013 lodging incidence
24 CQAS53 plant height
25 AQCF007 1000-seed weight
26 AQCF018 1000-seed weight
27 AQCF032 filled grain number
28 AQCF033 spikelet number
29 AQCF034 1000-seed weight
30 AQBK017 days to heading
31 CQAA18 relative phosphorus distribution between shoot and root
32 AQFE063 seed set percent
33 AQX002 primary branch
34 CQAE10 plant height
35 AQAP043 brown planthopper resistance
36 AQCE028 primary branch length
37 AQCU197 plant height
38 AQCU212 leaf length
39 AQFW218 leaf width
40 AQFU013 milled rice ratio
41 CQAG23 setback
42 AQBV012 leaf angle
43 AQBV013 tiller angle
44 AQBV014 leaf angle
45 AQHF007 leaf width
46 AQBC050 panicle tiller ratio
47 AQBC051 panicle tiller ratio
48 AQBC052 panicle tiller ratio
49 AQEA231 days to heading
50 AQEA232 days to heading
51 AQEA233 days to heading
52 AQEA234 days to heading
53 AQEA235 days to heading
54 AQEA236 days to heading
55 AQEA237 days to heading
56 AQEP005 seedling vigor
57 AQDX008 osmotic adjustment capacity
58 AQAX001 carbohydrate content
59 AQAX005 carbohydrate content
60 AQAX006 carbohydrate content
61 AQAX013 carbohydrate content
62 AQAX014 carbohydrate content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000527 etiolated shoot (+)
3 PO:0000003 whole plant (+)
4 PO:0005052 plant callus (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
8 PO:0025034 leaf (+)
9 PO:0025287 seedling coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Jain Mukesh; Kaur Navneet; Tyagi Akhilesh K; Khurana Jitendra P; The auxin-responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [15856348]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India