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Searching for LOC_Os05g45420
[CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os05g45420.1 |
506 |
14 |
266 |
PF00069.17 |
Pkinase |
2 |
LOC_Os05g45420.1 |
506 |
288 |
324 |
PF00627.23 |
UBA |
3 |
LOC_Os05g45420.1 |
506 |
459 |
504 |
PF02149.11 |
KA1 |
4 |
LOC_Os05g45420.2 |
506 |
14 |
266 |
PF00069.17 |
Pkinase |
5 |
LOC_Os05g45420.2 |
506 |
288 |
324 |
PF00627.23 |
UBA |
6 |
LOC_Os05g45420.2 |
506 |
459 |
504 |
PF02149.11 |
KA1 |
7 |
LOC_Os05g45420.3 |
506 |
14 |
266 |
PF00069.17 |
Pkinase |
8 |
LOC_Os05g45420.3 |
506 |
288 |
324 |
PF00627.23 |
UBA |
9 |
LOC_Os05g45420.3 |
506 |
459 |
504 |
PF02149.11 |
KA1 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCE:1000010 |
submergence stress |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007065 |
LP.05 five leaves visible |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]
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