Rice gene details
Searching for LOC_Os05g45420 [CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g45420.1 506 14 266 PF00069.17 Pkinase
2 LOC_Os05g45420.1 506 288 324 PF00627.23 UBA
3 LOC_Os05g45420.1 506 459 504 PF02149.11 KA1
4 LOC_Os05g45420.2 506 14 266 PF00069.17 Pkinase
5 LOC_Os05g45420.2 506 288 324 PF00627.23 UBA
6 LOC_Os05g45420.2 506 459 504 PF02149.11 KA1
7 LOC_Os05g45420.3 506 14 266 PF00069.17 Pkinase
8 LOC_Os05g45420.3 506 288 324 PF00627.23 UBA
9 LOC_Os05g45420.3 506 459 504 PF02149.11 KA1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  3
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0016301 kinase activity (RGAP)
Biological process
Not found
1 GO:0000003 reproduction (RGAP)
2 GO:0007275 multicellular organismal development (RGAP)
3 GO:0009719 response to endogenous stimulus (RGAP)
4 GO:0007165 signal transduction (RGAP)
5 GO:0006950 response to stress (RGAP)
6 GO:0006464 protein modification process (RGAP)
7 GO:0009991 response to extracellular stimulus (RGAP)
8 GO:0009791 post-embryonic development (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000010 submergence stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS62 1000-seed weight
3 AQFP018 culm strength
4 AQBK016 days to heading
5 AQEP016 seedling vigor
6 AQE042 grain yield per panicle
7 CQX28 internode length
8 AQGI228 total biomass yield
9 AQHR014 tiller number
10 AQAD001 sheath blight disease resistance
11 AQAG034 1000-seed weight
12 AQAI021 large vascular bundle number
13 AQCQ022 grain yield per plant
14 CQAJ20 grain number
15 AQBK015 days to heading
16 AQBK018 days to heading
17 CQAA19 relative phosphorus distribution between shoot and root
18 AQDZ002 lodging incidence
19 AQDZ013 lodging incidence
20 CQAS53 plant height
21 AQBK017 days to heading
22 CQAA18 relative phosphorus distribution between shoot and root
23 AQX002 primary branch
24 CQAE10 plant height
25 AQAP043 brown planthopper resistance
26 AQCE028 primary branch length
27 AQCU197 plant height
28 AQCU212 leaf length
29 AQFW218 leaf width
30 AQFU013 milled rice ratio
31 CQAG23 setback
32 AQBV012 leaf angle
33 AQBV013 tiller angle
34 AQBV014 leaf angle
35 AQHF007 leaf width
36 AQBC050 panicle tiller ratio
37 AQBC051 panicle tiller ratio
38 AQBC052 panicle tiller ratio
39 AQEA231 days to heading
40 AQEA232 days to heading
41 AQEA233 days to heading
42 AQEA234 days to heading
43 AQEA235 days to heading
44 AQEA236 days to heading
45 AQEA237 days to heading
46 AQEP005 seedling vigor
47 AQDX008 osmotic adjustment capacity
48 AQFE096 plant height
49 AQFE097 plant height
50 AQEJ075 leaf area
51 AQEJ077 root activity
52 CQAS63 spikelet number
53 CQAS54 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India