Rice gene details
Searching for LOC_Os05g46620 [chaperone protein dnaJ 10, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g46620.1 339 6 68 PF00226.23 DnaJ
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0019538 protein metabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 EO:0007175 temperature environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK013 days to heading
2 CQAS62 1000-seed weight
3 AQFP018 culm strength
4 AQBK016 days to heading
5 AQEP016 seedling vigor
6 AQE042 grain yield per panicle
7 AQBK015 days to heading
8 AQBK018 days to heading
9 CQAA19 relative phosphorus distribution between shoot and root
10 AQDZ002 lodging incidence
11 AQDZ013 lodging incidence
12 CQAS53 plant height
13 AQBK017 days to heading
14 CQAA18 relative phosphorus distribution between shoot and root
15 AQX002 primary branch
16 CQAE10 plant height
17 AQAP043 brown planthopper resistance
18 AQCE028 primary branch length
19 AQCU197 plant height
20 AQCU212 leaf length
21 AQFW218 leaf width
22 AQFU013 milled rice ratio
23 CQAG23 setback
24 AQBV012 leaf angle
25 AQBV013 tiller angle
26 AQBV014 leaf angle
27 AQBC050 panicle tiller ratio
28 AQBC051 panicle tiller ratio
29 AQBC052 panicle tiller ratio
30 AQEA231 days to heading
31 AQEA232 days to heading
32 AQEA233 days to heading
33 AQEA234 days to heading
34 AQEA235 days to heading
35 AQEA236 days to heading
36 AQEA237 days to heading
37 AQEP005 seedling vigor
38 AQDX008 osmotic adjustment capacity
39 AQFE096 plant height
40 AQFE097 plant height
41 CQAS63 spikelet number
42 CQAS54 days to heading
43 AQHF004 leaf length
44 AQHF011 leaf area
45 AQHF033 leaf width
46 AQAC004 germination speed
47 AQAC012 total biomass yield
48 AQAC025 root dry weight
49 AQAC043 root activity
50 AQAD003 sheath blight disease resistance
51 AQGI143 biomass yield
52 AQGI169 biomass yield
53 AQGI259 total biomass yield
54 AQHR015 tiller number
55 AQHR016 tiller number
56 AQCO121 spikelet fertility
57 CQR3 milled rice ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:2000012 yeast growth (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18
PMID [23160806]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India