Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os05g46620 [chaperone protein dnaJ 10, putative, expressed ] Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os05g46620.1 339 6 68 PF00226.23 DnaJ   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   1 N22InfloresenceFC   -1 N22 Root FC   -1 IR64 Flag-leaf FC   2 IR64InfloresenceFC   1 IR64 Root FC   -2 Functional details Molecular Function Not found 1 GO:0005515 protein binding (RGAP) Biological process Not found 1 GO:0019538 protein metabolic process (RGAP) 2 GO:0009987 cellular process (RGAP) Cellular component Not found 1 GO:0005829 cytosol (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007048 sodium chloride regimen (+) 2 EO:0007105 abscisic acid regimen (+) 3 EO:0007173 warm/hot temperature regimen (+) 4 EO:0007174 cold temperature regimen (+) 5 EO:0007175 temperature environment (+) Metabolic Pathway details Not found QTL details S. No. QTL Id QTL Associated Trait 1 AQBK013 days to heading 2 CQAS62 1000-seed weight 3 AQFP018 culm strength 4 AQBK016 days to heading 5 AQEP016 seedling vigor 6 AQE042 grain yield per panicle 7 AQBK015 days to heading 8 AQBK018 days to heading 9 CQAA19 relative phosphorus distribution between shoot and root 10 AQDZ002 lodging incidence 11 AQDZ013 lodging incidence 12 CQAS53 plant height 13 AQBK017 days to heading 14 CQAA18 relative phosphorus distribution between shoot and root 15 AQX002 primary branch 16 CQAE10 plant height 17 AQAP043 brown planthopper resistance 18 AQCE028 primary branch length 19 AQCU197 plant height 20 AQCU212 leaf length 21 AQFW218 leaf width 22 AQFU013 milled rice ratio 23 CQAG23 setback 24 AQBV012 leaf angle 25 AQBV013 tiller angle 26 AQBV014 leaf angle 27 AQBC050 panicle tiller ratio 28 AQBC051 panicle tiller ratio 29 AQBC052 panicle tiller ratio 30 AQEA231 days to heading 31 AQEA232 days to heading 32 AQEA233 days to heading 33 AQEA234 days to heading 34 AQEA235 days to heading 35 AQEA236 days to heading 36 AQEA237 days to heading 37 AQEP005 seedling vigor 38 AQDX008 osmotic adjustment capacity 39 AQFE096 plant height 40 AQFE097 plant height 41 CQAS63 spikelet number 42 CQAS54 days to heading 43 AQHF004 leaf length 44 AQHF011 leaf area 45 AQHF033 leaf width 46 AQAC004 germination speed 47 AQAC012 total biomass yield 48 AQAC025 root dry weight 49 AQAC043 root activity 50 AQAD003 sheath blight disease resistance 51 AQGI143 biomass yield 52 AQGI169 biomass yield 53 AQGI259 total biomass yield 54 AQHR015 tiller number 55 AQHR016 tiller number 56 AQCO121 spikelet fertility 57 CQR3 milled rice ratio Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000518 seedling development stage (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 PO:0008037 seedling (+) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity 1 MCT:2000012 yeast growth (+) Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18 PMID [23160806] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India