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Searching for LOC_Os05g48010
[MYB family transcription factor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os05g48010.1 |
290 |
14 |
62 |
PF00249.23 |
Myb_DNA-binding |
2 |
LOC_Os05g48010.1 |
290 |
68 |
113 |
PF00249.23 |
Myb_DNA-binding |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0016563 |
transcription activator activity |
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2 |
GO:0003677 |
DNA binding |
(RGAP) |
3 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009408 |
response to heat |
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2 |
GO:0009058 |
biosynthetic process |
(RGAP) |
3 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
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Cellular component
S. No. |
GO Id |
GO Description |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007173 |
warm/hot temperature regimen |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
S. No. |
Primary rice gene loci |
Interacting rice gene loci |
Experiment type |
Id |
Domain name/N or C term |
Amino acid involved in interaction |
Id |
Domain name/N or C term |
Bases
involved in interaction |
Reference point |
cis-elements [PLACE Id] |
1 |
LOC_Os05g48010 |
- |
--- |
LOC_Os02g47850 |
- |
460 - |
- |
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Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA) |
2 |
LOC_Os05g48010 |
- |
--- |
LOC_Os03g12290 |
- |
1079 - |
- |
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Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA) |
3 |
LOC_Os05g48010 |
- |
--- |
LOC_Os03g13300 |
- |
554 - |
- |
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Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA) |
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TSS - Transcriptional start site
TrSS - Translational start site |
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS |
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Related publications [Sorted by year] |
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1 |
El-Kereamy Ashraf; Bi Yong-Mei; Ranathunge Kosala; Beatty Perrin H; Good Allen G; Rothstein Steven J; The Rice R2R3-MYB Transcription Factor OsMYB55 Is Involved in the Tolerance to High Temperature and Modulates Amino Acid Metabolism. PloS one 2012:7
PMID [23251677]
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