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Searching for LOC_Os05g48200
[glutamate synthase, chloroplast precursor, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os05g48200.1 |
2189 |
107 |
484 |
PF00310.13 |
GATase_2 |
2 |
LOC_Os05g48200.1 |
2189 |
578 |
870 |
PF04898.6 |
Glu_syn_central |
3 |
LOC_Os05g48200.1 |
2189 |
934 |
1305 |
PF01645.9 |
Glu_synthase |
4 |
LOC_Os05g48200.1 |
2189 |
1385 |
1581 |
PF01493.11 |
GXGXG |
5 |
LOC_Os05g48200.1 |
2189 |
1826 |
2141 |
PF07992.6 |
Pyr_redox_2 |
6 |
LOC_Os05g48200.1 |
2189 |
1826 |
1859 |
PF00070.19 |
Pyr_redox |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003824 |
catalytic activity |
(RGAP) |
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Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0009536 |
plastid |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007097 |
ammonium sulfate regimen |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009005 |
root |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Ranathunge Kosala; El-Kereamy Ashraf; Gidda Satinder; Bi Yong-Mei; Rothstein Steven J; AMT1;1 transgenic rice plants with enhanced NH4 + permeability show superior growth and higher yield under optimal and suboptimal NH4 + conditions. Journal of experimental botany 2014:65
PMID [24420570]
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