Rice gene details
Searching for LOC_Os05g48200 [glutamate synthase, chloroplast precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g48200.1 2189 107 484 PF00310.13 GATase_2
2 LOC_Os05g48200.1 2189 578 870 PF04898.6 Glu_syn_central
3 LOC_Os05g48200.1 2189 934 1305 PF01645.9 Glu_synthase
4 LOC_Os05g48200.1 2189 1385 1581 PF01493.11 GXGXG
5 LOC_Os05g48200.1 2189 1826 2141 PF07992.6 Pyr_redox_2
6 LOC_Os05g48200.1 2189 1826 1859 PF00070.19 Pyr_redox
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -5
N22InfloresenceFC
  -1
N22 Root FC
  -120
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  -10

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0060359 response to ammonium ion  
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0008150 biological_process (RGAP)
6 GO:0040007 growth (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007097 ammonium sulfate regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFP018 culm strength
2 AQDZ002 lodging incidence
3 AQDZ013 lodging incidence
4 CQAS53 plant height
5 AQX002 primary branch
6 AQAP043 brown planthopper resistance
7 AQCE028 primary branch length
8 AQCU197 plant height
9 AQCU212 leaf length
10 AQFW218 leaf width
11 AQBV012 leaf angle
12 AQBV013 tiller angle
13 AQBV014 leaf angle
14 AQEP005 seedling vigor
15 AQDX008 osmotic adjustment capacity
16 CQAS54 days to heading
17 AQCO121 spikelet fertility
18 CQR3 milled rice ratio
19 AQEJ056 leaf length to width ratio
20 AQEJ058 leaf length
21 AQEJ060 leaf perimeter
22 AQAN001 drought tolerance
23 AQAC019 biomass yield
24 AQAC030 root length
25 AQAG005 grain yield
26 AQAG012 tiller number
27 AQGI046 root dry weight
28 AQGI175 biomass yield
29 AQGI188 biomass yield
30 AQGI229 total biomass yield
31 AQHR017 tiller number
32 AQHR018 tiller number
33 CQAS57 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ranathunge Kosala; El-Kereamy Ashraf; Gidda Satinder; Bi Yong-Mei; Rothstein Steven J; AMT1;1 transgenic rice plants with enhanced NH4 + permeability show superior growth and higher yield under optimal and suboptimal NH4 + conditions. Journal of experimental botany 2014:65
PMID [24420570]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India