Rice gene details
Searching for LOC_Os05g48630 [expressed protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g48630.2 143 3 142 PF03244.6 PSI_PsaH
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0015979 photosynthesis (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007235 silicon nutrient regimen (+)
2 EO:0007309 zinc nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFP018 culm strength
2 AQDZ002 lodging incidence
3 AQDZ013 lodging incidence
4 CQAS53 plant height
5 AQX002 primary branch
6 AQAP043 brown planthopper resistance
7 AQCE028 primary branch length
8 AQCU197 plant height
9 AQCU212 leaf length
10 AQFW218 leaf width
11 AQBV012 leaf angle
12 AQBV013 tiller angle
13 AQBV014 leaf angle
14 AQEP005 seedling vigor
15 AQDX008 osmotic adjustment capacity
16 CQAS54 days to heading
17 AQCO121 spikelet fertility
18 CQR3 milled rice ratio
19 AQEJ056 leaf length to width ratio
20 AQEJ058 leaf length
21 AQEJ060 leaf perimeter
22 AQAN001 drought tolerance
23 AQAC019 biomass yield
24 AQAC030 root length
25 AQAG005 grain yield
26 AQAG012 tiller number
27 AQGI046 root dry weight
28 AQGI175 biomass yield
29 AQGI188 biomass yield
30 AQGI229 total biomass yield
31 AQHR017 tiller number
32 AQHR018 tiller number
33 CQAS57 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Alin; Li Ping; Fan Fenliang; Li Zhaojun; Liang Yongchao; The effect of Silicon on photosynthesis and expression of its relevant genes in rice (Oryza sativa L.) under high-zinc stress. PloS one 2014:9
PMID [25426937]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India