Rice gene details
Searching for LOC_Os05g48810 [dnaJ domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g48810.1 363 4 67 PF00226.23 DnaJ
2 LOC_Os05g48810.1 363 238 360 PF01556.10 DnaJ_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009651 response to salt stress  
3 GO:0009737 response to abscisic acid stimulus  
4 GO:0019538 protein metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 EO:0007175 temperature environment (+)
6 MCE:1000132 sodium butyrate regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFP018 culm strength
2 AQDZ002 lodging incidence
3 AQDZ013 lodging incidence
4 CQAS53 plant height
5 AQX002 primary branch
6 AQAP043 brown planthopper resistance
7 AQCE028 primary branch length
8 AQCU197 plant height
9 AQCU212 leaf length
10 AQFW218 leaf width
11 AQBV012 leaf angle
12 AQBV013 tiller angle
13 AQBV014 leaf angle
14 AQEP005 seedling vigor
15 AQDX008 osmotic adjustment capacity
16 CQAS54 days to heading
17 AQCO121 spikelet fertility
18 CQR3 milled rice ratio
19 AQEJ056 leaf length to width ratio
20 AQEJ058 leaf length
21 AQEJ060 leaf perimeter
22 AQAN001 drought tolerance
23 AQAC019 biomass yield
24 AQAC030 root length
25 AQAG005 grain yield
26 AQAG012 tiller number
27 AQGI046 root dry weight
28 AQGI175 biomass yield
29 AQGI188 biomass yield
30 AQGI229 total biomass yield
31 AQHR017 tiller number
32 AQHR018 tiller number
33 CQAS57 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:2000012 yeast growth (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18
PMID [23160806]

Chung Pil Joong; Kim Yeon Shic; Jeong Jin Seo; Park Su-Hyun; Nahm Baek Hie; Kim Ju-Kon; The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice. The Plant Journal 2009:59
PMID [19453457]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India