Rice gene details
Searching for LOC_Os05g49170 [cold acclimation protein WCOR413, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g49170.1 223 24 215 PF05562.3 WCOR413
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0009991 response to extracellular stimulus (RGAP)
6 GO:0007154 cell communication (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAS53 plant height
2 AQX002 primary branch
3 AQAP043 brown planthopper resistance
4 AQCE028 primary branch length
5 AQCU197 plant height
6 AQCU212 leaf length
7 AQFW218 leaf width
8 AQBV012 leaf angle
9 AQBV013 tiller angle
10 AQBV014 leaf angle
11 AQEP005 seedling vigor
12 AQDX008 osmotic adjustment capacity
13 CQAS54 days to heading
14 AQCO121 spikelet fertility
15 CQR3 milled rice ratio
16 AQEJ056 leaf length to width ratio
17 AQEJ058 leaf length
18 AQEJ060 leaf perimeter
19 AQAN001 drought tolerance
20 AQAC019 biomass yield
21 AQAC030 root length
22 AQAG005 grain yield
23 AQAG012 tiller number
24 AQGI046 root dry weight
25 AQGI175 biomass yield
26 AQGI188 biomass yield
27 AQGI229 total biomass yield
28 AQHR017 tiller number
29 AQHR018 tiller number
30 CQAS57 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 LOC_Os09g13570 - --- LOC_Os05g49170 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Liu Citao; Mao Bigang; Ou Shujun; Wang Wei; Liu Linchuan; Wu Yanbin; Chu Chengcai; Wang Xiping; OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice. Plant molecular biology 2014:84
PMID [23918260]


Yang An; Dai Xiaoyan; Zhang Wen-Hao; A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. Journal of Experimental Botany 2012:
PMID [22301384]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India