Rice gene details
Searching for LOC_Os05g49300 [iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g49300.1 173 40 167 PF01592.8 NifU_N
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  28
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  6

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005198 structural molecule activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009412 response to heavy metal  
3 GO:0010039 response to iron ion  
4 GO:0010044 response to aluminum ion  
5 GO:0010106 cellular response to iron ion starvation  
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005739 mitochondrion (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000143 iron deficiency treatment (+)
3 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAS53 plant height
2 AQX002 primary branch
3 AQAP043 brown planthopper resistance
4 AQCE028 primary branch length
5 AQCU197 plant height
6 AQCU212 leaf length
7 AQFW218 leaf width
8 AQBV012 leaf angle
9 AQBV013 tiller angle
10 AQBV014 leaf angle
11 AQEP005 seedling vigor
12 AQDX008 osmotic adjustment capacity
13 CQAS54 days to heading
14 AQCO121 spikelet fertility
15 CQR3 milled rice ratio
16 AQEJ056 leaf length to width ratio
17 AQEJ058 leaf length
18 AQEJ060 leaf perimeter
19 AQAN001 drought tolerance
20 AQAC019 biomass yield
21 AQAC030 root length
22 AQAG005 grain yield
23 AQAG012 tiller number
24 AQGI046 root dry weight
25 AQGI175 biomass yield
26 AQGI188 biomass yield
27 AQGI229 total biomass yield
28 AQHR017 tiller number
29 AQHR018 tiller number
30 CQAS57 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India