Rice gene details
Searching for LOC_Os05g50890 [OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g50890.1 582 8 565 PF03321.5 GH3
2 LOC_Os05g50890.2 582 8 565 PF03321.5 GH3
3 LOC_Os05g50890.3 349 8 349 PF03321.5 GH3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0016740 transferase activity (RGAP)
3 GO:0003824 catalytic activity (RGAP)
4 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009607 response to biotic stimulus  
3 GO:0009611 response to wounding  
4 GO:0009620 response to fungus  
5 GO:0006464 protein modification process (RGAP)
6 GO:0009719 response to endogenous stimulus (RGAP)
7 GO:0009987 cellular process (RGAP)
8 GO:0006950 response to stress (RGAP)
9 GO:0009607 response to biotic stimulus (RGAP)
10 GO:0008150 biological_process (RGAP)
11 GO:0009791 post-embryonic development (RGAP)
12 GO:0009628 response to abiotic stimulus (RGAP)
13 GO:0009605 response to external stimulus (RGAP)
14 GO:0007165 signal transduction (RGAP)
15 GO:0008152 metabolic process (RGAP)
16 GO:0006629 lipid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)
2 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 EO:0007373 mechanical damage (+)
4 MCE:1000103 fluridone (+)
5 MCE:1000277 Magnaporthe grisea race 007 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAP043 brown planthopper resistance
2 AQCE028 primary branch length
3 AQCU197 plant height
4 AQCU212 leaf length
5 AQFW218 leaf width
6 AQBV012 leaf angle
7 AQBV013 tiller angle
8 AQBV014 leaf angle

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007065 LP.05 five leaves visible (+)
3 PO:0007098 LP.02 two leaves visible (+)
4 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 MCP:1000527 etiolated shoot (+)
3 PO:0000003 whole plant (+)
4 PO:0005052 plant callus (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
8 PO:0025034 leaf (+)
9 PO:0025287 seedling coleoptile (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000123 jasmonic acid-isoleucine content (+)
2 MCT:1000124 jasmonic acid-valine content (+)
3 TO:0002668 jasmonic acid content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]

Wakuta Shinji; Suzuki Erika; Saburi Wataru; Matsuura Hideyuki; Nabeta Kensuke; Imai Ryozo; Matsui Hirokazu; OsJAR1 and OsJAR2 are jasmonyl-l-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling. Biochemical and Biophysical Research Communications 2011:
PMID [21619871]

Jain Mukesh; Kaur Navneet; Tyagi Akhilesh K; Khurana Jitendra P; The auxin-responsive GH3 gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [15856348]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India