Rice gene details
Searching for LOC_Os05g50900 [helix-loop-helix DNA-binding protein, putative ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g50900.1 493 256 307 PF00010.18 HLH
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -2
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0009987 cellular process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
4 GO:0009653 anatomical structure morphogenesis (RGAP)
5 GO:0030154 cell differentiation (RGAP)
6 GO:0009791 post-embryonic development (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAP043 brown planthopper resistance
2 AQCE028 primary branch length
3 AQCU197 plant height
4 AQCU212 leaf length
5 AQFW218 leaf width
6 AQBV012 leaf angle
7 AQBV013 tiller angle
8 AQBV014 leaf angle

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India