Rice gene details
Searching for LOC_Os05g51610 [sodium/calcium exchanger protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g51610.1 454 103 254 PF01699.16 Na_Ca_ex
2 LOC_Os05g51610.1 454 299 432 PF01699.16 Na_Ca_ex
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  4
N22 Root FC
  -17
IR64 Flag-leaf FC
  18
IR64InfloresenceFC
  -2
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0008150 biological_process (RGAP)
4 GO:0019725 cellular homeostasis (RGAP)
5 GO:0008152 metabolic process (RGAP)
6 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamada Nana; Theerawitaya Cattarin; Cha-Um Suriyan; Kirdmanee Chalermpol; Takabe Teruhiro; Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars. Protoplasma 2014:
PMID [24482191]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India