Rice gene details
Searching for LOC_Os06g02040 [late embryogenesis abundant group 1, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g02040.1 104 1 73 PF03760.7 LEA_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
 
N22 Root FC
  131
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009266 response to temperature stimulus  
3 GO:0009314 response to radiation  
4 GO:0009409 response to cold  
5 GO:0009411 response to UV  
6 GO:0009605 response to external stimulus  
7 GO:0009628 response to abiotic stimulus  
8 GO:0009651 response to salt stress  
9 GO:0050896 response to stimulus  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007173 warm/hot temperature regimen (+)
3 EO:0007222 UV light regimen (+)
4 EO:0007288 magnesium nutrient regimen (+)
5 MCE:1000078 potassium chloride regimen (KCl) (+)
6 MCE:1000119 calcium chloride regimen (CaCl2) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency

Plant developmental stage / tissue details
Plant development stage
Not found
Plant tissue/organ
Not found
Others
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000074 cell viability (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Hu Tingzhang; Zeng Hua; He Shuai; Wu Yingmei; Wang Guixue; Huang Xiaoyun; Molecular analysis of OsLEA4 and its contributions to improve E. coli viability. Applied biochemistry and biotechnology 2012:166
PMID [22057936]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India