Rice gene details
Searching for LOC_Os06g02180 [CSLD2 - cellulose synthase-like family D, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g02180.1 1171 300 1170 PF03552.6 Cellulose_synt
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -4
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0005975 carbohydrate metabolic process (RGAP)
5 GO:0009653 anatomical structure morphogenesis (RGAP)
6 GO:0030154 cell differentiation (RGAP)
7 GO:0007275 multicellular organismal development (RGAP)
8 GO:0016049 cell growth (RGAP)
9 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005794 Golgi apparatus (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 FAO-PWY fatty acid β-oxidation I

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 AQAB050 spikelet number
7 AQAB073 spikelet number
8 AQAI013 leaf area
9 AQBZ001 days to heading
10 AQBZ004 days to heading
11 AQCY034 1000-seed weight
12 AQGI136 biomass yield
13 CQX3 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000520 young inflorescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ding Zhengquan; Lin Zefeng; Li Qin; Wu Hao; Xiang Chunyan; Wang Jianfei; DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.). Biochemical and biophysical research communications 2015:457
PMID [25522878]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India