Rice gene details
Searching for LOC_Os06g03990 [aminotransferase, classes I and II, domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g03990.1 543 144 531 PF00155.13 Aminotran_1_2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0008152 metabolic process (RGAP)
Cellular component
Not found

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 DENOVOPURINE2-PWY purine nucleotides de novo biosynthesis I
2 TYRFUMCAT-PWY tyrosine degradation I

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQCQ024 grain yield per plant
8 AQCQ040 1000-seed weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
3 PO:0007089 stem elongation (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 PO:0000003 whole plant (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0020039 leaf lamina (+)
6 PO:0020142 stem internode (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


Zhang Haiwen; Zhang Jianfei; Quan Ruidang; Pan Xiaowu; Wan Liyun; Huang Rongfeng; EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance. Planta 2013:
PMID [23420309]


Wan Liyun; Zhang Jianfei; Zhang Haiwen; Zhang Zhijin; Quan Ruidang; Zhou Shirong; Huang Rongfeng; Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice. Plos One 2011:6
PMID [21966459]


Iwamoto M; Baba-Kasai A; Kiyota S; Hara N; Takano M; ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice. Plant, Cell & Environment 2010:
PMID [20040065]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India