Rice gene details
Searching for LOC_Os06g04380 [aminomethyltransferase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g04380.1 402 25 278 PF01571.13 GCV_T
2 LOC_Os06g04380.1 402 288 383 PF08669.3 GCV_T_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  5
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0010039 response to iron ion  
3 GO:0010106 cellular response to iron ion starvation  
4 GO:0009987 cellular process (RGAP)
5 GO:0009056 catabolic process (RGAP)
6 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 GLYCLEAV-PWY glycine cleavage complex

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQCQ024 grain yield per plant
8 AQCQ040 1000-seed weight
9 AQFX001 days to heading
10 AQCV026 chalkiness of endosperm
11 AQCV027 chalkiness of endosperm
12 AQCV038 chalkiness of endosperm
13 AQCI009 phosphorus sensitivity
14 CQE43 ratooning ability
15 AQGA001 amylose content
16 AQGA015 amylose content
17 AQGA030 gelatinization temperature
18 AQGA038 gelatinization temperature
19 AQFU006 head rice
20 AQFU016 amylose content
21 AQFU018 alkali digestion
22 AQFU022 protein content
23 CQI6 sodium concentration
24 AQCU128 plant height
25 AQFR015 seedling vigor
26 AQFR045 seedling vigor
27 AQFV031 seedling vigor

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India