Rice gene details
Searching for LOC_Os06g05110 [superoxide dismutase, chloroplast, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g05110.1 256 42 127 PF00081.14 Sod_Fe_N
2 LOC_Os06g05110.1 256 132 238 PF02777.10 Sod_Fe_C
3 LOC_Os06g05110.3 210 42 127 PF00081.14 Sod_Fe_N
4 LOC_Os06g05110.3 210 132 172 PF02777.10 Sod_Fe_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010272 response to silver ion  
2 GO:0008152 metabolic process (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005622 intracellular (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000091 methyl viologen/paraquat (+)
2 MCE:1000340 silver nanoparticles (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 DETOX1-PWY removal of superoxide radicals

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQCQ024 grain yield per plant
8 AQCQ040 1000-seed weight
9 AQFX001 days to heading
10 AQCV026 chalkiness of endosperm
11 AQCV027 chalkiness of endosperm
12 AQCV038 chalkiness of endosperm
13 AQCI009 phosphorus sensitivity
14 CQE43 ratooning ability
15 AQGA001 amylose content
16 AQGA015 amylose content
17 AQGA030 gelatinization temperature
18 AQGA038 gelatinization temperature
19 AQFU006 head rice
20 AQFU016 amylose content
21 AQFU018 alkali digestion
22 AQFU022 protein content
23 CQI6 sodium concentration
24 AQCU128 plant height
25 AQFR015 seedling vigor
26 AQFR045 seedling vigor
27 AQFV031 seedling vigor
28 AQCB005 spikelet number
29 AQEX005 plant height
30 AQGI054 root dry weight
31 AQHR041 plant height
32 AQHR042 plant height
33 CQAL13 grain length
34 CQAL22 grain core percent white
35 AQCY005 panicle number
36 AQCY026 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nair Prakash M Gopalakrishnan; Chung Ill Min; Physiological and molecular level effects of silver nanoparticles exposure in rice (Oryza sativa L.) seedlings. Chemosphere 2014:112
PMID [25048895]

Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. The Plant Cell 2011:23
PMID [21239643]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India