Rice gene details
Searching for LOC_Os06g05400 [IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g05400.1 187 67 159 PF01521.12 Fe-S_biosyn
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005198 structural molecule activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009412 response to heavy metal  
3 GO:0010039 response to iron ion  
4 GO:0010044 response to aluminum ion  
5 GO:0046686 response to cadmium ion  
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)
2 EO:0007242 iron nutrient regimen (+)
3 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQFX001 days to heading
8 AQCV026 chalkiness of endosperm
9 AQCV027 chalkiness of endosperm
10 AQCV038 chalkiness of endosperm
11 AQCI009 phosphorus sensitivity
12 CQE43 ratooning ability
13 AQFU006 head rice
14 AQFU016 amylose content
15 AQFU018 alkali digestion
16 AQFU022 protein content
17 CQI6 sodium concentration
18 AQCU128 plant height
19 AQFR015 seedling vigor
20 AQFR045 seedling vigor
21 AQFV031 seedling vigor
22 AQCY005 panicle number
23 AQCY026 panicle number
24 AQAB036 panicle length
25 AQAB058 spikelet number
26 AQHR043 plant height
27 AQHR044 plant height
28 AQCQ017 1000-seed weight
29 AQY011 days to heading
30 AQY015 days to heading
31 CQAL10 chalkiness of endosperm
32 CQAL18 grain length to width ratio
33 CQAW18 tiller number
34 AQEN005 blast disease resistance
35 CQAW19 root number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India