Rice gene details
Searching for LOC_Os06g06320 [osFTL2 FT-Like2 homologous to Flowering Locus T gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g06320.1 180 22 167 PF01161.12 PBP
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  3
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -2
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0008289 lipid binding (RGAP)
Biological process
Not found
1 GO:0009908 flower development (RGAP)
2 GO:0000003 reproduction (RGAP)
3 GO:0009791 post-embryonic development (RGAP)
4 GO:0009628 response to abiotic stimulus (RGAP)
5 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)
2 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007196 light regimen (+)
2 EO:0007200 short day length regimen (+)
3 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQFX001 days to heading
8 AQCV026 chalkiness of endosperm
9 AQCV027 chalkiness of endosperm
10 AQCV038 chalkiness of endosperm
11 AQCI009 phosphorus sensitivity
12 CQE43 ratooning ability
13 AQFU006 head rice
14 AQFU016 amylose content
15 AQFU018 alkali digestion
16 AQFU022 protein content
17 CQI6 sodium concentration
18 AQCY005 panicle number
19 AQCY026 panicle number
20 AQCQ017 1000-seed weight
21 AQY011 days to heading
22 AQY015 days to heading
23 CQAL10 chalkiness of endosperm
24 CQAL18 grain length to width ratio
25 CQAW18 tiller number
26 AQEN005 blast disease resistance
27 CQAW19 root number
28 AQEJ010 leaf length
29 AQEJ011 leaf length
30 AQEJ012 leaf width
31 AQEJ013 leaf width
32 AQEJ014 leaf length to width ratio
33 AQEJ015 leaf length to width ratio
34 AQEJ016 leaf length to width ratio
35 AQCU188 days to heading
36 AQFW092 leaf length
37 AQCF008 filled grain number
38 AQCF009 spikelet number
39 AQCF010 grain yield
40 AQCF019 filled grain number
41 AQCF020 spikelet number
42 AQCF021 grain yield
43 AQCF036 filled grain number
44 AQCF037 spikelet number
45 AQCF038 spikelet fertility
46 AQCF039 1000-seed weight
47 AQCF040 grain yield
48 AQGJ005 blast disease resistance
49 AQGJ023 blast disease resistance
50 AQEJ026 leaf width
51 AQEJ028 leaf width
52 CQAF3 amylose content
53 CQAF5 gel consistency
54 AQHR045 plant height
55 AQHR046 plant height
56 AQAI048 large vascular bundle number to leaf area ratio
57 AQDY078 panicle length
58 AQDY082 panicle length
59 AQDY083 panicle length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0020039 leaf lamina (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Choi Sang Chul; Lee Shinyoung; Kim Sung-Ryul; Lee Yang-Seok; Liu Chunyan; Cao Xiaofeng; An Gynheung; Trithorax Group Protein Oryza sativa Trithorax1 Controls Flowering Time in Rice via Interaction with Early heading date3. Plant physiology 2014:164
PMID [24420930]


Li Riqing; Xia Jixing; Xu Yiwei; Zhao Xiucai; Liu Yao-Guang; Chen Yuanling; Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2014:127
PMID [24158250]


Kim Soon-Kap; Yun Choong-Hyo; Lee Jeong Hwan; Jang Yun Hee; Park Hyo-Young; Kim Jeong-Kook; OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice. Planta 2008:228
PMID [18449564]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India